CX047489

Overview
NameCX047489
Unique NameCX047489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047489 vs. ExPASy Swiss-Prot
Match: ERPA_SALCH (Iron-sulfur cluster insertion protein erpA OS=Salmonella choleraesuis GN=erpA PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.388e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:  280 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 603
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LQFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047489 vs. ExPASy Swiss-Prot
Match: ERPA_SALAR (Iron--sulfur cluster insertion protein erpA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.388e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:  280 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 603
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LQFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047489 vs. ExPASy Swiss-Prot
Match: ERPA_SALA4 (Iron--sulfur cluster insertion protein erpA OS=Salmonella agona (strain SL483) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.388e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:  280 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 603
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LQFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047489 vs. ExPASy Swiss-Prot
Match: ERPA_RALEJ (Putative iron-sulfur cluster insertion protein erpA OS=Ralstonia eutropha (strain JMP134) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.388e-16
Identity = 44/105 (41.90%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:  289 TDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 603
            TD+   ++K+L   E  + +  LR+ V+ GGCSGFQY F  D ++N DD    K+GV L++D++SY ++ GA +DY E++  + FV+  NP+A   C C SSF V
Sbjct:   20 TDSAADKVKQL-IEEEGNAELKLRVFVQGGGCSGFQYGFTFDEEVNEDDTTMVKNGVTLLIDSMSYQYLVGAEIDYKEDINGAQFVIK-NPNASTTCGCGSSFSV 122
[Close]
BLAST of CX047489 vs. ExPASy Swiss-Prot
Match: ERPA_RALEH (Putative iron-sulfur cluster insertion protein erpA OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.388e-16
Identity = 44/105 (41.90%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:  289 TDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 603
            TD+   ++K+L   E  + +  LR+ V+ GGCSGFQY F  D ++N DD    K+GV L++D++SY ++ GA +DY E++  + FV+  NP+A   C C SSF V
Sbjct:   20 TDSAADKVKQL-IEEEGNAELKLRVFVQGGGCSGFQYGFTFDEEVNEDDTTMVKNGVTLLIDSMSYQYLVGAEIDYKEDINGAQFVIK-NPNASTTCGCGSSFSV 122
[Close]
BLAST of CX047489 vs. ExPASy Swiss-Prot
Match: ERPA_ESCF3 (Iron--sulfur cluster insertion protein erpA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.388e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:  280 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 603
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047489 vs. ExPASy Swiss-Prot
Match: ERPA_ECOUT (Iron-sulfur cluster insertion protein erpA OS=Escherichia coli (strain UTI89 / UPEC) GN=erpA PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.388e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:  280 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 603
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047489 vs. ExPASy Swiss-Prot
Match: ERPA_ECOSM (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.388e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:  280 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 603
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047489 vs. ExPASy Swiss-Prot
Match: ERPA_ECOSE (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli (strain SE11) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.388e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:  280 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 603
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047489 vs. ExPASy Swiss-Prot
Match: ERPA_ECOLU (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.388e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:  280 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 603
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
The following BLAST results are available for this feature:
BLAST of CX047489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 313
Match NameE-valueIdentityDescription
ERPA_SALCH1.388e-1644.44Iron-sulfur cluster insertion protein erpA OS=Salm... [more]
ERPA_SALAR1.388e-1644.44Iron--sulfur cluster insertion protein erpA OS=Sal... [more]
ERPA_SALA41.388e-1644.44Iron--sulfur cluster insertion protein erpA OS=Sal... [more]
ERPA_RALEJ1.388e-1641.90Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_RALEH1.388e-1641.90Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_ESCF31.388e-1644.44Iron--sulfur cluster insertion protein erpA OS=Esc... [more]
ERPA_ECOUT1.388e-1644.44Iron-sulfur cluster insertion protein erpA OS=Esch... [more]
ERPA_ECOSM1.388e-1644.44Iron--sulfur cluster insertion protein erpA OS=Esc... [more]
ERPA_ECOSE1.388e-1644.44Iron--sulfur cluster insertion protein erpA OS=Esc... [more]
ERPA_ECOLU1.388e-1644.44Iron--sulfur cluster insertion protein erpA OS=Esc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_14E02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14E02-J3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047489 ID=CX047489; Name=CX047489; organism=Citrus sinensis; type=EST; length=834bp
TGAAATTTCATCCCCATGTCGAAGAAGCAGCCAGAGAGAAACCGAAATAG
AACGGAACTATTAAAAACCGACCGTTGGATGATTCTCTGAAGAGAAACAC
AGCAACAAACGAACGACATGTCGAGATCGCTGATTCAACGCCTTGCCCCA
TACTTTGCTGCTCGACTACGACAAAACCATAGGCTTCTCAGCTCATCTCC
TTCTTCTGCTGCTGCCGCTCTTAACGAAGCTTCTTCTTCTCCTTCATCTT
CTGAGTCTCCTTCCCCTTCTTTAGATTCCATTCACATGACTGATAATTTC
ATCAAAAGAATGAAAGAACTCCAAGCCAGTGAAACATCAGACAATAAAGC
TATGCTTCGGTTGGGTGTGGAAACTGGTGGATGTTCTGGTTTCCAATATG
CTTTTGATTTGGACTATAAAATCAACCCTGATGACAGGATTTTTGAGAAG
GATGGAGTTAAATTGGTGGTTGATAATATTTCATATGATTTTGTAAAGGG
GGCAACTGTTGATTATGTTGAGGAGCTGATCCGCTCTGCATTCGTGGTGA
GTACAAATCCTAGTGCAGTGGGCGGATGCAGTTGTAAAAGCTCCTTTATG
GTGAAACAGTAGTTTTTCCCATTCCATGAACCATGATACCATACTTTTAA
TTTGGCTGAGAGACTATCTAAGTTTTGCTATAATGGATCTTTGAATCAAC
TTTTCTACTTCAATTTTTTCCATTACAATTCATTTGAATCAGATCCATCT
CTGTAATTTTTTCCCCTTTTTCTGCGACATATGTATCTCTACTATATCAT
TTGGTGTCTGAAGCATGTGCCGCTTATCTATCAA
back to top