CX047462

Overview
NameCX047462
Unique NameCX047462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047462 vs. ExPASy Swiss-Prot
Match: PAG2_BOVIN (Pregnancy-associated glycoprotein 2 OS=Bos taurus GN=PAG2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.849e-28
Identity = 71/193 (36.79%), Postives = 101/193 (52.33%), Query Frame = 2
Query:  197 LDLHSLNAARITRKERYMGGAGVSGVHHRLGDSDEDIL--PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLN 769
            L L  +   R T +E+ +    +    +RL  +D  I   PL+N++D  Y G I IG+PPQ F V+FDTGS+NLWVP   C  S +CY H  +  + S+++ E+G    I YGSG I GF                 F  +  E     L   FDGI+GL F  + + D +P++DN+   G  SE VF+F+LN
Sbjct:   19 LPLKKMKTLRETLREKNLLNNFLEEQAYRLSKNDSKITIHPLRNYLDTAYVGNITIGTPPQEFRVVFDTGSANLWVPCITC-TSPACYTHKTFNPQNSSSFREVGSPITIFYGSGIIQGFLGSDTVRIGNLVSPEQSFGLSLEEYGFDSL--PFDGILGLAFPAMGIEDTIPIFDNLWSHGAFSEPVFAFYLN 208          
BLAST of CX047462 vs. ExPASy Swiss-Prot
Match: PAG2_PIG (Pregnancy-associated glycoprotein 2 OS=Sus scrofa GN=PAG2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.414e-28
Identity = 66/157 (42.04%), Postives = 91/157 (57.96%), Query Frame = 2
Query:  311 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNMDPD 781
            PL+N++D  Y G I IG+PPQ FSV+FDTGSS+LWVPS  C  S +C  H  +    S+T+ + GKS ++ YGSG +SGF  Q              F  +  E    F  A FDGI+GL +  IA+     V DN+ +Q  +SE VF+F+L+ D +
Sbjct:   67 PLRNYLDMVYVGNISIGTPPQQFSVVFDTGSSDLWVPSIYCK-SKACVTHRSFNPSHSSTFHDRGKSIKLEYGSGKMSGFLGQDTVRIGQLTSTGQAFGLSKEETGKAFEHAIFDGILGLAYPSIAIKGTTTVIDNLKKQDQISEPVFAFYLSSDKE 222          
BLAST of CX047462 vs. ExPASy Swiss-Prot
Match: CHYM_CALJA (Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.414e-28
Identity = 71/197 (36.04%), Postives = 111/197 (56.35%), Query Frame = 2
Query:  194 RLDLHSLNAARITRKERYMGGAGVSGVHH---RLGDSDEDILP--LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLN 769
            R+ LH   + R   KER +    +    H   R   +  ++    L N++D QYFG+I IG+PPQ F+V+FDTGSS+LWVPS  C  S++C  H R+   KS+T+  + KS  I YG+GS+ G                     +T+E    F  + FDGI+GL +  +A   +VPV+DNM+++ LV++++FS +++
Sbjct:   21 RIPLHKGKSLRRALKERGLLEDFLKNHQHAVSRKHSNSREVASEFLTNYLDCQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSVYCN-SVACQNHHRFDPSKSSTFQNMDKSLSIQYGTGSMQGLLGYDTVTVSSIVDPHQTVGLSTQEPGDVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVAQDLFSVYMS 216          
BLAST of CX047462 vs. ExPASy Swiss-Prot
Match: PEPC_MOUSE (Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.174e-28
Identity = 73/217 (33.64%), Postives = 112/217 (51.61%), Query Frame = 2
Query:  122 WVLASCLLLPASSNGLRSIGLKKRRLDLHSLNAARITRK--ERYMGGAGVSGVHHRLGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL 766
            W++ + L LP     L  + LKK +    ++    + +   + +    G      + GD      P+  +MDA Y+GEI IG+PPQNF V+FDTGSSNLWV S  C  S +C  H+RY   KS+TY   G++  + YG+GS++GFF                F  +  E    F+ A+FDGI+GL +  ++ G A      M+ +G +S+ +F  +L
Sbjct:    3 WMVVALLCLPLLEAALIRVPLKKMKSIRETMKEQGVLKDFLKNHKYDPGQKYHFGKFGDYSVLYEPMA-YMDASYYGEISIGTPPQNFLVLFDTGSSNLWVSSVYCQ-SEACTTHTRYNPSKSSTYYTQGQTFSLQYGTGSLTGFFGYDTLRVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPGLSSGGATTALQGMLGEGALSQPLFGVYL 217          
BLAST of CX047462 vs. ExPASy Swiss-Prot
Match: PEPA_CALJA (Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.486e-27
Identity = 65/154 (42.21%), Postives = 94/154 (61.04%), Query Frame = 2
Query:  311 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLN 769
            PL N++D +YFG IGIG+P Q F+VIFDTGSSNLWVPS  C  S +C  H+R+  ++S+TY    ++  I YG+GS++G                  F +  T  GS  +  + FDGI+GL +  I+   A PV+DN+  Q LVS+++FS +L+
Sbjct:   66 PLVNYLDMEYFGTIGIGTPAQEFTVIFDTGSSNLWVPSIYC-SSPACTNHNRFNPQESSTYQATSQTLSIAYGTGSMTGILGYDTVQVGGIADTNQIFGLSETEPGSFLY-YSPFDGILGLAYPSISSSGATPVFDNIWNQDLVSQDLFSVYLS 217          
BLAST of CX047462 vs. ExPASy Swiss-Prot
Match: PEPC_RAT (Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 72/217 (33.18%), Postives = 111/217 (51.15%), Query Frame = 2
Query:  122 WVLASCLLLPASSNGLRSIGLKKRRLDLHSLNAARITRK--ERYMGGAGVSGVHHRLGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL 766
            W++ + L LP     L  + L+K +    ++    + +   + +    G        GD      P+  +MDA YFGEI IG+PPQNF V+FDTGSSNLWV S  C  S +C  H+R+   KS+TY   G++  + YG+GS++GFF                F  +  E    F+ A+FDGI+GL +  ++ G A      M+ +G +S+ +F  +L
Sbjct:    3 WMVVALLCLPLLEASLLRVPLRKMKSIRETMKEQGVLKDFLKTHKYDPGQKYHFGNFGDYSVLYEPMA-YMDASYFGEISIGTPPQNFLVLFDTGSSNLWVSSVYCQ-SEACTTHARFNPSKSSTYYTEGQTFSLQYGTGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPGLSSGGATTALQGMLGEGALSQPLFGVYL 217          
BLAST of CX047462 vs. ExPASy Swiss-Prot
Match: PEPC_CAVPO (Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 59/149 (39.60%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  320 NFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL 766
            ++MDA YFG+I +G+PPQ+F V+FDTGSSNLWVPS  C  S++C  H+R+  R S+TY    +S  + YG+GS++G F                F  +  E    F+ A FDGI+GLG+  ++ G A      ++ +G +S+ +FS +L
Sbjct:   73 SYMDAAYFGQISLGTPPQSFQVLFDTGSSNLWVPSVYC-SSLACTTHTRFNPRDSSTYVATDQSFSLEYGTGSLTGVFGYDTMTIQDIQVPKQEFGLSETEPGSDFVYAEFDGILGLGYPGLSEGGATTAMQGLLREGALSQSLFSVYL 220          
BLAST of CX047462 vs. ExPASy Swiss-Prot
Match: PAG_HORSE (Pregnancy-associated glycoprotein OS=Equus caballus GN=PAG PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 61/164 (37.20%), Postives = 95/164 (57.93%), Query Frame = 2
Query:  278 HRLGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLN 769
            H+  DS     P++N++D  Y G I +G+PPQ F VIFDTGS++LWVPS  C  S +C  H+ +   +S+T+   G+  ++ YG+G +SGF                 F  +  E      LA FDGI+GL +  ++V    PV+DN+  QGL+S+++F+F+L+
Sbjct:   54 HKHADSGVAFEPMRNYLDIAYMGIISVGTPPQEFQVIFDTGSADLWVPSIYC-SSPACSNHNTFNPLRSSTFVASGQPIKLIYGTGKMSGFVGYDTIKISSLVDRNQAFGLSVEEPDKILELATFDGILGLSYPSLSVKGVTPVFDNLWNQGLLSQKLFAFYLS 216          
BLAST of CX047462 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.730e-26
Identity = 58/156 (37.18%), Postives = 91/156 (58.33%), Query Frame = 2
Query:  311 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNMDP 778
            P  N++D+ YFGEI IG+PPQNF ++FDTGSSNLWVPS+ C  S +C  H+R+   +S+TY    ++  + YG GS++                   F  +  E +  F  + FDGI+G+ +  +AV +   V  NM++QG +++ +FSF+ +  P
Sbjct:   65 PFTNYLDSYYFGEISIGTPPQNFLILFDTGSSNLWVPSTYCQ-SQACSNHNRFNPSRSSTYQSSEQTYTLAYGFGSLTVLLGYDTVTVQNIVIHNQLFGMSENEPNYPFYYSYFDGILGMAYSNLAVDNGPTVLQNMMQQGQLTQPIFSFYFSPQP 219          
BLAST of CX047462 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.034e-26
Identity = 74/220 (33.64%), Postives = 113/220 (51.36%), Query Frame = 2
Query:  140 LLLPASSNGLRSIGLKKRRLDLHSLNAARITR--KERYMGGAGVSGVHHRLGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYF-SISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIE----ATREGSLTFLLARFDGIIGLGFREIAVGD-AVPVWDNMVEQGLVSEEVFSFWLNMD 775
            L L A ++ ++ I L+KR           I    K +Y+ G         + + D     L ++ +AQY+G + IG+PPQNF V+FDTGSSNLWVP + C F  I+C  H+R+  +KS++ T  G S EI YG+GS+ G                    +    AT E  +TF+ A+FDGI G+G+  I+V   + P+        +   ++F+FWL+ D
Sbjct:    9 LALVALASAIQRIKLEKRTYTREQYKFGSIQEHLKAKYVPGY--------IPNKDAFNEGLSDYSNAQYYGPVTIGTPPQNFQVLFDTGSSNLWVPCANCPFGDIACRMHNRFDCKKSSSCTATGASFEIQYGTGSMKGTVDNDVVCFGHDTTYCTDKNQGLACATSEPGITFVAAKFDGIFGMGWDTISVNKISQPMDQIFANSAICKNQLFAFWLSRD 220          
The following BLAST results are available for this feature:
BLAST of CX047462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
PAG2_BOVIN1.849e-2836.79Pregnancy-associated glycoprotein 2 OS=Bos taurus ... [more]
PAG2_PIG2.414e-2842.04Pregnancy-associated glycoprotein 2 OS=Sus scrofa ... [more]
CHYM_CALJA2.414e-2836.04Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1[more]
PEPC_MOUSE9.174e-2833.64Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1[more]
PEPA_CALJA3.486e-2742.21Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1[more]
PEPC_RAT4.553e-2733.18Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1[more]
PEPC_CAVPO4.553e-2739.60Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1[more]
PAG_HORSE4.553e-2737.20Pregnancy-associated glycoprotein OS=Equus caballu... [more]
PEPB_CANFA1.730e-2637.18Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]
ASP3_CAEEL5.034e-2633.64Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14C11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14C11-F21-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047462 ID=CX047462; Name=CX047462; organism=Citrus sinensis; type=EST; length=785bp
CTCTGTCACTCTACACTTCCTGAAGTACATTATCTTCACTTTACCTTGCT
TCAAACTCAGCTTCAGCAGAAAACCAAAGAACATCATGGAGCAGAAACTT
CTTCGGTCAGTTTTCTGTTTATGGGTGCTAGCGTCGTGCTTGCTTCTTCC
TGCTTCCTCTAATGGCTTACGGAGCATTGGCTTGAAGAAGCGGCGTCTAG
ATCTTCATAGTCTAAATGCTGCAAGAATAACAAGAAAAGAGCGATATATG
GGGGGAGCAGGTGTTAGTGGCGTGCACCATCGTTTGGGTGATTCAGATGA
AGATATTTTGCCTTTGAAGAACTTTATGGATGCTCAATACTTTGGAGAGA
TTGGTATTGGCTCTCCCCCACAAAATTTCAGTGTCATATTTGATACCGGC
AGTTCCAATCTCTGGGTTCCATCTTCAAAGTGCTATTTCTCTATTTCCTG
CTATTTCCATTCGAGGTACAAGTCCAGAAAATCCAATACATATACCGAAA
TTGGAAAATCCTGTGAAATAAACTATGGATCTGGATCAATTTCTGGCTTC
TTCAGTCAAGACAATGTTGAAGTTGGGGATGTTGTTGTCAAGGATCAGGT
TTTCATTGAGGCTACACGAGAAGGGAGTCTCACTTTTCTATTGGCAAGGT
TTGATGGAATAATAGGGCTTGGGTTCCGGGAAATTGCAGTTGGGGATGCT
GTGCCTGTGTGGGACAATATGGTTGAGCAGGGCCTTGTAAGCGAGGAGGT
CTTCTCATTCTGGCTCAACATGGATCCAGACGCTG
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