CX047421

Overview
NameCX047421
Unique NameCX047421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047421 vs. ExPASy Swiss-Prot
Match: CP4FE_MOUSE (Leukotriene-B4 omega-hydroxylase 3 OS=Mus musculus GN=Cyp4f14 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.624e-24
Identity = 62/182 (34.07%), Postives = 100/182 (54.95%), Query Frame = -1
Query:  218 SMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---NYDGLNHLKIVQMILYEVLRLYPPVTVLSRSVLKETKL-GNLTLPAGVQIGLPMILVHQDPELWG----YDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMAMAMILQNY 739
            S  D+  E   F F G +TT+  L+W +  L++H ++QER RQEV ++    +P    +D L  L  + M + E LRL+PPVTV+SR   ++  L    T+P G+   + +  +H +P +W     YD   F PE   +       + +++ PF+ GPR C+GQ FA+ E K+A+A+ L  +
Sbjct:  314 SDEDIRAEADTFMFEGHDTTASGLSWILYNLARHPEYQERCRQEVQELLRGREPEEIEWDDLAQLPFLTMCIKESLRLHPPVTVISRCCTQDILLPDGRTIPKGIICLISIFGIHHNPSVWPDPEVYDPFRFDPENIKD------SSPLAFIPFSAGPRNCIGQTFAMSEMKVALALTLLRF 489          
BLAST of CX047421 vs. ExPASy Swiss-Prot
Match: CP3AI_RAT (Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a18 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.624e-24
Identity = 66/227 (29.07%), Postives = 115/227 (50.66%), Query Frame = -1
Query:  209 MGIIKNREKAMKAGEAAND-----DLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-NYDGLNHLKIVQMILYEVLRLYPPVTVLSRSVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGYDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMAMAMILQNYSFE 871
            M   K   K MK     ++     D L ++M T        G       S  ++  +  +F F G + TS  +++ M  L+   + Q++ + E+ +   N  P  YD L  ++ + M++ E LRLYP  T L R   K+ ++  + +P G  + +P+  +H++PE W  +  EF PERF++  +K + +   Y PF  GPR C+G  FAL+  K+A+  +LQN++ +
Sbjct:  246 MNFFKKFVKTMKKNRLDSNQKNRVDFLQLMMNTQ----NSKGQESQKALSDLEMAAQAIIFIFGGYDATSTSISFIMYELATRPNVQKKLQNEIDRALPNKAPVTYDALMEMEYLDMVVNESLRLYPIATRLDRVSKKDVEINGVFIPKGTVVTIPIYPLHRNPEYW-LEPEEFNPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRFALISMKLAVIGVLQNFNIQ 466          
BLAST of CX047421 vs. ExPASy Swiss-Prot
Match: CP4F3_RAT (Leukotriene-B(4) omega-hydroxylase 2 OS=Rattus norvegicus GN=Cyp4f3 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.345e-24
Identity = 70/216 (32.41%), Postives = 115/216 (53.24%), Query Frame = -1
Query:  218 EKAMKA-GEAANDDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---NYDGLNHLKIVQMILYEVLRLYPPVTVLSRSVLKETKL-GNLTLPAGVQIGLPMILVHQDPELWGYDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMAMAMILQNY 850
            + A+KA  +A   D + +L+ +     +EHG       S  D+  E   F F G +TT+  L+W +  L+KH ++QER RQEV ++  + +P    +D L  L  + M + E LRL+PP T +SR   ++  L     +P GV   + +   H +P +W  D   + P RF     K  ++ +++ PF+ GPR C+GQ FA+ E K+A+A+ L  +
Sbjct:  284 DDALKAKAKAKTLDFIDVLLLSK----DEHGE----ALSDEDIRAEADTFMFGGHDTTASGLSWILYNLAKHPEYQERCRQEVRELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHPPATAISRCCTQDIMLPDGRVIPKGVICRISIFGTHHNPAVWP-DPEVYNPFRFDADNGK-GRSPLAFIPFSAGPRNCIGQTFAMSEMKVALALTLLRF 489          
BLAST of CX047421 vs. ExPASy Swiss-Prot
Match: C13A8_CAEEL (Putative cytochrome P450 CYP13A8 OS=Caenorhabditis elegans GN=cyp-13A8 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.345e-24
Identity = 68/224 (30.36%), Postives = 119/224 (53.12%), Query Frame = -1
Query:  209 NREKAMKAGEAAN--DDLLGILMET-----SFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPNYDGLNHLKIVQMILYEVLRLYPPVTVL-SRSVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGYDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMAMAMILQNYSFE 856
            +++  ++ GEAA+  D  L    E      S  E  +  +  N   +  ++I +C +F  AG +TT++ L++    L+ +   Q + + EV +   N++  +D L+ LK +  ++ E LRL+P  +   SR  ++ T +G   + AGV + +    +H D  +WG D  EFKPER+   ++     Q +Y  F  GPR+C+G  FAL+E K  ++ IL+ Y+FE
Sbjct:  260 DKKHGVEPGEAADYIDMFLNARAEVEHFGESNDEFHKSSSYNNRQLTTQEIISQCFVFLVAGFDTTAISLSYVTYFLALNPKIQSKLQDEVDKECPNDEITFDQLSKLKYMDNVIKESLRLFPFASFANSRRCMRNTVIGEQIVEAGVDVMIDTWTLHHDKNVWGNDVEEFKPERWDSPLTP----QQAYLSFGAGPRVCLGMRFALLEQKGLLSHILKKYTFE 479          
BLAST of CX047421 vs. ExPASy Swiss-Prot
Match: CP3AP_MOUSE (Cytochrome P450 3A25 OS=Mus musculus GN=Cyp3a25 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.593e-24
Identity = 68/227 (29.96%), Postives = 114/227 (50.22%), Query Frame = -1
Query:  209 MGIIKNREKAMKAGEAAND-----DLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-NYDGLNHLKIVQMILYEVLRLYPPVTVLSRSVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGYDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMAMAMILQNYSFE 871
            M   K   K MK    A++     D L ++M T        G       S  ++  +  +F F G + TS  ++  M  L+ H D Q++ + E+ +   N  P  YD L  ++ + M++ E LRLYP    L R   K+ ++  + +P G  + +P+  +H++PE W  +  EF PERF++  +K   +   Y PF  GPR C+G  FAL+  K+A+  +LQN++ +
Sbjct:  246 MNFFKKFVKRMKKERLASNQKNRVDFLQLMMNTQ----NSKGQESQKALSDLEMAAQAVIFIFGGYDATSTSISLIMYELATHPDVQKKLQDEIDRTLPNKAPVTYDALMDMEYLDMVVNESLRLYPIAIRLERVSKKDVEINGVFIPKGTVVMIPIYPLHRNPEYWP-EPQEFCPERFSKE-NKGNIDPYIYMPFGNGPRNCIGMRFALISIKLAVIGVLQNFTVQ 466          
BLAST of CX047421 vs. ExPASy Swiss-Prot
Match: C4D20_DROME (Probable cytochrome P450 4d20 OS=Drosophila melanogaster GN=Cyp4d20 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.593e-24
Identity = 69/214 (32.24%), Postives = 113/214 (52.80%), Query Frame = -1
Query:  200 GEAANDDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---NYDGLNHLKIVQMILYEVLRLYPPVTVLSRSVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGYDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMAMAMILQNYSFELSP 832
            G  +   LL IL+++S           N   S  D+ EE   F F G +TTS  ++  +  +++H + Q+R  +E+ +V G +         L  LK +  ++ E +RLYPPV  + R   KE ++G+ T+PA   I L +   H+D   +  D + F+PERF E   +   N  +Y PF+ GP+ C+GQ FA++E K+ ++ +L+ Y  EL P
Sbjct:  280 GSKSQMALLDILLQSSIN---------NQPLSDADIREEVDTFMFEGDDTTSSGVSHALYAIARHPEVQQRIFEELQRVLGPDASAPVTQAQLQDLKYLDCVIKETMRLYPPVPAIGRHAQKELEIGDKTIPANTSIYLVLYYAHRDANYFP-DPLSFRPERFLED-QEQGHNTFAYVPFSAGPKNCIGQKFAVLEMKVLISKVLRFY--ELLP 480          
BLAST of CX047421 vs. ExPASy Swiss-Prot
Match: C340_ORYLA (Cytochrome P450 3A40 OS=Oryzias latipes GN=cyp3a40 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.593e-24
Identity = 65/195 (33.33%), Postives = 106/195 (54.36%), Query Frame = -1
Query:  206 IEEHGNNKN----VGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-NYDGLNHLKIVQMILYEVLRLYPPVTVLSRSVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGYDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMAMAMILQNYSFEL 775
            I+   NN+N     G S ++++ +  +F FAG ETTS  L +    L+ + +  ++ ++E+   F N  P  Y  L  ++ +  ++ E LRLYP    L R      ++  L +P  + + +P   +H+DPELW  +  +FKPERF++  +K   +  +Y PF  GPR C+G  FALV  K+A+  ILQ Y F +
Sbjct:  276 IDSQKNNQNGLQDKGLSDHEILSQAMIFIFAGYETTSSSLTFLAYNLATNPEVMKKLQKEIDATFPNKAPVQYVPLMEMEYLDCVVNESLRLYPIAARLERVAKATVEVNGLVIPKDMVVMVPTWPLHRDPELWP-EPEKFKPERFSKE-NKDTFDPYTYMPFGAGPRNCIGMRFALVMMKLAVVEILQTYDFSV 468          
BLAST of CX047421 vs. ExPASy Swiss-Prot
Match: CP4AL_PIG (Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus scrofa GN=CYP4A21 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.253e-23
Identity = 69/217 (31.80%), Postives = 116/217 (53.46%), Query Frame = -1
Query:  125 EHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-NYDGLNHLKIVQMILYEVLRLYPPVTVLSRSVLKE-TKLGNLTLPAGVQIGLPMILVHQDPELWGYDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMAMAMILQNYSFELSPSYVHAPTAVPTLHPELGTQLILRKL 769
            E+GN+     S  DV  E   F  AG ++T+  ++W +  L+ + + Q+R R+E+  + G+     +D L+ +    M + E LRLYPPV  + R + K  T     +LPAG+ + L +  +H +P++W  +  EF P RFA G   +A++  ++ PF+ G R C+G+ FA+ E K+ +A+ L  +     PS +  P     L  + G  L LRK+
Sbjct:  295 ENGNS----LSDTDVRAEVDTFMAAGHDSTASGISWVLYALASNPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPSVGRELSKPITFPDGRSLPAGIILSLSIYGLHHNPQVWP-NPEEFDPSRFAPG---SARHSHAFMPFSGGSRNCIGKQFAMNEMKVVVALTLLRFELAPDPSRIPVPIQGIVLKSKNGIHLNLRKI 503          
BLAST of CX047421 vs. ExPASy Swiss-Prot
Match: CP4X1_HUMAN (Cytochrome P450 4X1 OS=Homo sapiens GN=CYP4X1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.636e-23
Identity = 81/259 (31.27%), Postives = 132/259 (50.97%), Query Frame = -1
Query:  125 IIKNREKAMKAGEAAND-------DLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-NYDGLNHLKIVQMILYEVLRLYPPVTVLSRSVLKE-TKLGNLTLPAGVQIGLPMILVHQDPELWGYDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMAMAMILQNYSFELSPSYVHAPTAVPT---LHPELGTQLILRKL 865
            II+ R+K+++AG   ++       D L I++       +E G++    FS  DV  E   F  AG +T +  ++W +  L+ + + QER R+EV  + G+     +D L  +    M + E  RL P V  +SR + K  T     TLPAG+ + L +  +H +P +W    V F P RF++  S   ++  +Y PF+ G R C+GQ FA++E K+ +A+IL ++     P+    P   P    L P+ G  L L+KL
Sbjct:  261 IIQERKKSLQAGVKQDNTPKRKYQDFLDIVLSAK----DESGSS----FSDIDVHSEVSTFLLAGHDTLAASISWILYCLALNPEHQERCREEVRGILGDGSSITWDQLGEMSYTTMCIKETCRLIPAVPSISRDLSKPLTFPDGCTLPAGITVVLSIWGLHHNPAVWKNPKV-FDPLRFSQENSDQ-RHPYAYLPFSAGSRNCIGQEFAMIELKVTIALILLHFRVTPDPT---RPLTFPNHFILKPKNGMYLHLKKL 506          
BLAST of CX047421 vs. ExPASy Swiss-Prot
Match: CP4A2_RAT (Cytochrome P450 4A2 OS=Rattus norvegicus GN=Cyp4a2 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.636e-23
Identity = 77/251 (30.68%), Postives = 127/251 (50.60%), Query Frame = -1
Query:  122 IKNREKAMKAGEAANDDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-NYDGLNHLKIVQMILYEVLRLYPPVTVLSRSVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGYDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMAMAMILQNYSFELSPSYVHAPTAVP--TLHPELGTQLILRKLR 862
            ++N E+  KA +  + D L IL+   F ++E+         S  D+  E   F F G +TT+  ++W    L+ H + QER R+EV  + G+     +D L+ +    M + E LRLY PV  +SR +       +  ++P G+++ + +  +H +P  W    V F P RF+     + ++  +Y PF+ G R C+G+ FA+ E K+A+A+ L    FEL P     P  +P   L  + G  L L+KLR
Sbjct:  268 LQNEEELQKARKKRHLDFLDILL---FAKMED-----GKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKV-FDPSRFSPD---SPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTL--LRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR 504          
The following BLAST results are available for this feature:
BLAST of CX047421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CP4FE_MOUSE5.624e-2434.07Leukotriene-B4 omega-hydroxylase 3 OS=Mus musculus... [more]
CP3AI_RAT5.624e-2429.07Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a... [more]
CP4F3_RAT7.345e-2432.41Leukotriene-B(4) omega-hydroxylase 2 OS=Rattus nor... [more]
C13A8_CAEEL7.345e-2430.36Putative cytochrome P450 CYP13A8 OS=Caenorhabditis... [more]
CP3AP_MOUSE9.593e-2429.96Cytochrome P450 3A25 OS=Mus musculus GN=Cyp3a25 PE... [more]
C4D20_DROME9.593e-2432.24Probable cytochrome P450 4d20 OS=Drosophila melano... [more]
C340_ORYLA9.593e-2433.33Cytochrome P450 3A40 OS=Oryzias latipes GN=cyp3a40... [more]
CP4AL_PIG1.253e-2331.80Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus s... [more]
CP4X1_HUMAN1.636e-2331.27Cytochrome P450 4X1 OS=Homo sapiens GN=CYP4X1 PE=2... [more]
CP4A2_RAT1.636e-2330.68Cytochrome P450 4A2 OS=Rattus norvegicus GN=Cyp4a2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14A12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A12-B23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047421 ID=CX047421; Name=CX047421; organism=Citrus sinensis; type=EST; length=874bp
TTTTAAGCTTTGAATCTCAATACAAAATTAAATACATTAAACTTCATTAT
AAAAGAGTCTACATTGGCATCATGCTAATCTTATTGACAATATATAGTTG
CCGGTATTAATTATTTTTGCACCTTAGTTTCCGTAGAATCAATTGGGTAC
CCAGTTCCGGATGAAGGGTTGGAACCGCCGTTGGAGCATGGACATAGGAT
GGAGACAACTCGAATGAGTAGTTTTGAAGAATCATTGCCATGGCCATTTT
TGCTTCTACTAGAGCAAAATTTTGTCCAACACATATCCTAGGACCCAATG
CGAATGGGAAATATGAAACTTGATTTTTGGCCGCCTTTGAAATTCCTTCC
GCAAACCTTTCCGGCTTAAACTCAACTGCATCGTAACCCCAAAGTTCAGG
ATCCTGGTGAACTAGGATCATTGGCAAGCCAATTTGAACCCCAGCGGGTA
ATGTCAAGTTTCCGAGTTTCGTTTCCTTAAGAACAGATCGACTAAGCACA
GTTACAGGCGGATAAAGCCTGAGTACCTCGTAAAGTATCATCTGGACAAT
TTTGAGGTGATTCAATCCATCATAGTTGGGCTTATTATTGCCAAACACTT
GCAAAACCTCTTGCCTTGCACGTTCTTGCCAATCTTGATGCTTGCTCAAT
AAGACCATCGTCCAATTAAGCAAAACAGAGGTAGTCTCTTGGCCGGCAAA
GTAAAATAGCTTACACTCTTCGATCACATCGTTCATGCTGAACCCAACAT
TTTTGTTATTTCCATGTTCTTCAATCTCTCTAAAACTGGTTTCCATCAGT
ATGCCTAACAAGTCATCGTTCGCAGCTTCCCCTGCTTTCATTGCCTTCTC
CCTATTTTTGATGATTCCCATCAA
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