CX047419

Overview
NameCX047419
Unique NameCX047419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047419 vs. ExPASy Swiss-Prot
Match: DNJB1_BOVIN (DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.791e-23
Identity = 58/148 (39.19%), Postives = 85/148 (57.43%), Query Frame = -3
Query:  429 GEKVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 872
            G+ +  E K+L + V++G + G KITFP E D+  + +  DIVFVL+ K H  FKR G D+     +SL EALCG    +  LDGR + +  +  +V++P   + +  EG+P+ + P  RG L I F V FPE +      +LE VLP
Sbjct:  194 GKSIRNEDKILTIEVKRGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 339          
BLAST of CX047419 vs. ExPASy Swiss-Prot
Match: DNAJ1_DROME (DnaJ protein homolog 1 OS=Drosophila melanogaster GN=DnaJ-1 PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 8.121e-23
Identity = 55/143 (38.46%), Postives = 83/143 (58.04%), Query Frame = -3
Query:  429 QEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLP 857
            +E+KVL + V+ G + G KITFP E D AP+    DIVF+++ K H  FKR+G DL     +SL +ALCG    +  L G ++ +     E++KP   + IN  G+P+ + P  RG L + F + FP++L+P     L  +LP
Sbjct:  192 KEEKVLRITVKPGWKAGTKITFPQEGDSAPNKTPADIVFIIRDKPHSLFKREGIDLKYTAQISLKQALCGALVSVPTLQGSRIQVNPN-HEIIKPTTTRRINGLGLPVPKEPSRRGDLIVSFDIKFPDTLAPSLQNQLSELLP 333          
BLAST of CX047419 vs. ExPASy Swiss-Prot
Match: DNJ20_CAEEL (DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=dnj-20 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.875e-22
Identity = 60/150 (40.00%), Postives = 88/150 (58.67%), Query Frame = -3
Query:  420 KVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES-LSPDQCKMLETVLPPRT 866
            K++QE KVLEV VE G  NG +  F GE +   +   GD+ F ++ ++HP+F+RKGDDL+   T+SL +AL GF+  I HLDG   ++K Q  +V  P       DEGMP  +    +G L + F V+FP++ LS +Q   +  +L   T
Sbjct:  199 KLVQENKVLEVEVEVGADNGHQQIFHGEGEPHIEGDPGDLKFKIRIQKHPRFERKGDDLYTNVTISLQDALNGFEMEIQHLDGH--IVKVQRDKVTWPGARLRKKDEGMPSLEDNNKKGMLVVTFDVEFPKTELSDEQKAQIIEILQQNT 346          
BLAST of CX047419 vs. ExPASy Swiss-Prot
Match: PSI1_SCHPO (Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.927e-21
Identity = 58/139 (41.73%), Postives = 78/139 (56.12%), Query Frame = -3
Query:  456 IQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKS----QPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQ 860
            ++  ++LE+ V+ G + G KI F GE DE PD    DI FVL +K HP F R GDDL ++  LSL EAL GF   I+ +DG++L + S    QPG  +    F      GMP+ + P  RG + I   V FP  L+P Q
Sbjct:  240 VKADRILEIKVKPGWKAGTKIKFAGEGDEKPDGTVQDIQFVLAEKPHPVFTRSGDDLRMQVELSLKEALLGFSKQISTIDGKKLKVSSSLPTQPGYEITYPGF------GMPLPKNPSQRGNMIIECKVKFPTELTPAQ 372          
BLAST of CX047419 vs. ExPASy Swiss-Prot
Match: DJB13_MOUSE (DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.211e-20
Identity = 49/139 (35.25%), Postives = 81/139 (58.27%), Query Frame = -3
Query:  432 KVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVL 848
            K+L + V  G + G +ITF  E D+ P+ +  DI+F++++K HP+F+R+ D+LF  + + L +AL      +  LD R  L+     ++V P  FK +  EGMP+ + P  +G L+I F + FP  L+P + +ML   L
Sbjct:  178 KILTIDVRPGWRQGTRITFEKEGDQGPNIIPADIIFIVKEKLHPRFRREHDNLFFVYPIPLGKALTCCTVEVKTLDDR--LLNIPINDIVHPKYFKIVPGEGMPLPENPSKKGDLFIFFDIQFPTRLTPQKKQMLRQAL 314          
BLAST of CX047419 vs. ExPASy Swiss-Prot
Match: DJB13_HUMAN (DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.888e-20
Identity = 48/139 (34.53%), Postives = 82/139 (58.99%), Query Frame = -3
Query:  432 KVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVL 848
            K+L + V+ G + G +ITF  E D+ P+ +  DI+F++++K HP+F+R+ D+LF  + + L +AL      +  LD R  L+     +++ P  FK +  EGMP+ + P  +G L+I F + FP  L+P + +ML   L
Sbjct:  178 KILTIDVKPGWRQGTRITFEKEGDQGPNIIPADIIFIVKEKLHPRFRRENDNLFFVNPIPLGKALTCCTVEVRTLDDR--LLNIPINDIIHPKYFKKVPGEGMPLPEDPTKKGDLFIFFDIQFPTRLTPQKKQMLRQAL 314          
BLAST of CX047419 vs. ExPASy Swiss-Prot
Match: DJB11_PONAB (DnaJ homolog subfamily B member 11 OS=Pongo abelii GN=DNAJB11 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.872e-19
Identity = 49/139 (35.25%), Postives = 82/139 (58.99%), Query Frame = -3
Query:  450 KVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCK 866
            K++ E++ LEV +E G+++G +  F GE +   D   GD+ F ++  +HP F+R+GDDL+   T+SL E+L GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ +
Sbjct:  200 KLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAR 336          
BLAST of CX047419 vs. ExPASy Swiss-Prot
Match: DJB11_HUMAN (DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.872e-19
Identity = 49/139 (35.25%), Postives = 82/139 (58.99%), Query Frame = -3
Query:  450 KVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCK 866
            K++ E++ LEV +E G+++G +  F GE +   D   GD+ F ++  +HP F+R+GDDL+   T+SL E+L GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ +
Sbjct:  200 KLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAR 336          
BLAST of CX047419 vs. ExPASy Swiss-Prot
Match: DJB11_CANFA (DnaJ homolog subfamily B member 11 OS=Canis familiaris GN=DNAJB11 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19
Identity = 49/139 (35.25%), Postives = 81/139 (58.27%), Query Frame = -3
Query:  450 KVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCK 866
            K++ E++ LEV +E G+++G +  F GE +   D   GD+ F ++  +HP F+R+GDDL+   T+SL E+L GF   ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ +
Sbjct:  200 KLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFDMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAR 336          
BLAST of CX047419 vs. ExPASy Swiss-Prot
Match: DJB11_RAT (DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.447e-19
Identity = 50/139 (35.97%), Postives = 81/139 (58.27%), Query Frame = -3
Query:  450 KVIQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCK 866
            K++ E++ LEV +E G+++G +  F GE +   D   GD+ F ++  +H  F+R+GDDL+   T+SL EAL GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ K
Sbjct:  200 KLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHRIFERRGDDLYTNVTVSLVEALVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAK 336          
The following BLAST results are available for this feature:
BLAST of CX047419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
DNJB1_BOVIN2.791e-2339.19DnaJ homolog subfamily B member 1 OS=Bos taurus GN... [more]
DNAJ1_DROME8.121e-2338.46DnaJ protein homolog 1 OS=Drosophila melanogaster ... [more]
DNJ20_CAEEL6.875e-2240.00DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=d... [more]
PSI1_SCHPO9.927e-2141.73Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 ... [more]
DJB13_MOUSE2.211e-2035.25DnaJ homolog subfamily B member 13 OS=Mus musculus... [more]
DJB13_HUMAN2.888e-2034.53DnaJ homolog subfamily B member 13 OS=Homo sapiens... [more]
DJB11_PONAB1.872e-1935.25DnaJ homolog subfamily B member 11 OS=Pongo abelii... [more]
DJB11_HUMAN1.872e-1935.25DnaJ homolog subfamily B member 11 OS=Homo sapiens... [more]
DJB11_CANFA3.193e-1935.25DnaJ homolog subfamily B member 11 OS=Canis famili... [more]
DJB11_RAT5.447e-1935.97DnaJ homolog subfamily B member 11 OS=Rattus norve... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_14A11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A11-B21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047419 ID=CX047419; Name=CX047419; organism=Citrus sinensis; type=EST; length=877bp
TTTTTTTTTTTTTTTTTAACACCACCCTGAAATATTGTAAACACTAAAAA
TATTAATTATGAGCATTGAGTCTGAAGGTGCAAACGCTAGAATTCCATTA
CATAGTCAGTTATCAGAAAAACATAAGAATAAAGACAGACAAACCAAAAC
TAGAACCTCTAAAGCCTATAACAGAAAATAAATATGTTGAGAATCTTTTT
CTCCCAAACAATGAAAATACTAAATCAGGCCACCCCTTTTCTTCTACATC
ATCACTGCTGAGCACACTGCACTCTCTGGGCACCACCTTGCATATCGTCA
TCTTCATCGTATGCCTCCTGAGCTGCTTGTTGCTTCCTTCGCATTTCCTC
CTCAATGTTCACATCATGCAGGGTTGTTTCTTCACACTCATCCAGTTCCA
TATCGGTGAGCTGGACTGAGGTCCTTGGAGGTAGTACGGTCTCCAGCATC
TTGCACTGGTCTGGGCTCAGTGACTCAGGGAAGTCAACACTGAAATGAAT
GTACAGTTTGCCCCTCATAAATGGCCTCTGATACATAGGCATTCCTTCAT
CATTTATGGCCTTGAATTGGTCCGGCTTGACTACTTCCCCAGGCTGGGAT
TTGATGAGGAGTTGCCGGCCATCCAAATGAGTTATTACAAATTGAAAGCC
ACAGAGAGCTTCTGTCAGTGACAGGGTGTGCTCAACAAATAGGTCATCAC
CCTTTCGCTTAAATTTCGGGTGCTCTTTCTGTTGTAGAACAAATACAATG
TCACCTGTGACAGTGTCGGGCGCTTCATCAGCTTCTCCAGGGAACGTAAT
CTTCTGTCCATTTTGCATCCCCTTCTCAACAATAACCTCCAAGACTTTTT
TCTCCTGAATGACCTTCTCACCCTTAC
back to top