CX047417

Overview
NameCX047417
Unique NameCX047417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.065e-30
Identity = 70/137 (51.09%), Postives = 91/137 (66.42%), Query Frame = -2
Query:  215 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 619
            +G  AGRKL   RR  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L + ++EK
Sbjct:    8 KGEFAGRKLLLKRRASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144          
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_METLZ (30S ribosomal protein S12P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps12p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.065e-30
Identity = 71/139 (51.08%), Postives = 92/139 (66.19%), Query Frame = -2
Query:  209 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 619
            +G  A R L    ++ RW+D  Y +  L  + K  P  G+   + IVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF   DG +N+I+E+DEV I G  GR G ++GDIPGVRF V  V+GVSL  L   + EK R
Sbjct:    3 QGKFAARNLVRTAKKFRWSDSVYSRRALKLKLKADPLEGAPIGRAIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVTICGIGGRAGRSMGDIPGVRFVVSGVNGVSLNELVIGRAEKAR 141          
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.351e-29
Identity = 69/137 (50.36%), Postives = 91/137 (66.42%), Query Frame = -2
Query:  215 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 619
            +G  AGRKL   R+  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L + ++EK
Sbjct:    8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVLVGKNSIRELVRGRQEK 144          
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.351e-29
Identity = 69/137 (50.36%), Postives = 91/137 (66.42%), Query Frame = -2
Query:  215 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 619
            +G  AGRKL   R+  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L + ++EK
Sbjct:    8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144          
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.351e-29
Identity = 70/138 (50.72%), Postives = 95/138 (68.84%), Query Frame = -2
Query:  215 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG--RKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 619
            RG  AGRKL+  R+  RW D +Y +  L  + K  P  G+  A+GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+ + AF P +  +N+I+E+DEV+I G G  +   A GDIPGV++KV+ V   SL  L + ++EK
Sbjct:    8 RGEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDIPGVKYKVIMVGRNSLRELVRGRQEK 145          
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.305e-29
Identity = 68/137 (49.64%), Postives = 91/137 (66.42%), Query Frame = -2
Query:  215 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 619
            +G  AGRKL   R+  RW    Y    LG + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC +VQLIKNG+ + AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KV+ V   S+  L + ++EK
Sbjct:    8 KGEFAGRKLLLKRKATRWQHYKYVNRELGLKVKADPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVLMVGKNSIRELVRGRQEK 144          
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_META3 (30S ribosomal protein S12P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps12p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.931e-29
Identity = 68/139 (48.92%), Postives = 90/139 (64.75%), Query Frame = -2
Query:  209 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 619
            +G  AGRK+   R+  RW    Y    L   E   P  G+   +GIV+EK+G+EAKQPNSAIRKC +VQLIKNG+ + AF P +  +N+I+E+DEV+I G  G  G A GDIPGVRF+VV V   S+  L + ++EK R
Sbjct:    8 KGEFAGRKIVLKRKESRWHHYKYVNKALKLKEKSDPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRFRVVMVGKNSMRELVRGRQEKVR 146          
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_NANEQ (30S ribosomal protein S12P OS=Nanoarchaeum equitans GN=rps12p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.265e-27
Identity = 71/138 (51.45%), Postives = 88/138 (63.77%), Query Frame = -2
Query:  209 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 616
            G+ AGRKLK  R++ RW D  Y +  L  + K  P  G+  A GIVLEK  +E +QPNS   K  RVQL KNGK + AF P DG +  I+E+DEVLI G  GR+G ++GDIPGVR+KV  V+G  L  L K K EK R
Sbjct:    5 GLFAGRKLKKIRKKFRWNDYRYVRRMLRIKEKYDPLEGAPMASGIVLEKTDVERRQPNSGRIKVVRVQLKKNGKVVTAFTPGDGAIKVIDEHDEVLIVGIRGRQGRSMGDIPGVRYKVYLVNGQPLELLRKGKIEKAR 142          
The following BLAST results are available for this feature:
BLAST of CX047417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_METM76.065e-3051.0930S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METLZ6.065e-3051.0830S ribosomal protein S12P OS=Methanocorpusculum l... [more]
RS12_METMP1.351e-2950.3630S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METM51.351e-2950.3630S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METJA1.351e-2950.7230S ribosomal protein S12P OS=Methanocaldococcus j... [more]
RS12_METVS2.305e-2949.6430S ribosomal protein S12P OS=Methanococcus vannie... [more]
RS12_META33.931e-2948.9230S ribosomal protein S12P OS=Methanococcus aeolic... [more]
RS12_NANEQ1.265e-2751.4530S ribosomal protein S12P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14A10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A10-B19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047417 ID=CX047417; Name=CX047417; organism=Citrus sinensis; type=EST; length=692bp
TTTTTTTTTTTTTTTTTGCAGTCAACAAGCCACTCAAGTAGAAGAGACAG
ATACTAATTTACTAATAGTCTCAACAGAGGGAAAAAAACCAAAAAGTTCT
CTCAACAGCAATACATGATAAAGGAAAAAAGTAATCAACAGGGATTAATG
AAAATAAAGTGCTAAAAAAAGAAAACATGGTGAAGTATCTTGAATCAGGA
GTTTAGGATCTTGGTTTCTCCTTCTTCTCCTTGAAGAGGGCCAGAAGAGA
CACGCCTGAAACCTTGACAACCTTAAATCTAACACCAGGAATATCTCCCA
CAGCATGCCCCTTTCGACCAAATCCTGCAATAAGTACCTCGTCATTTTCT
TCAATGTAGTTCAAACAACCATCGTTTGGTACGAAAGCTGCAATCTTCTT
TCCATTCTTGATCAGCTGAACTCGAGCGCATTTTCTGATAGCAGAGTTGG
GCTGCTTTGCCTCGATACCGATTTTCTCAAGAACAATGCCTTTTGCATGG
GAAGAGCCAGCAAATGGCTTCTTCCATTCATTGCCAAGGTGGGATTTCTT
GTATGACTTATCAGCCCACCTTTGTCTTCTGCGGTGGCTCTTCAGCTTGC
GACCAGCTCCCATTCCACGTGTCTTCCCCATGTTGGCGTTACGAAGAGGA
TTTTTTACTGTAACGAACGACTTTGGAGCTTGAGAGTTGCCT
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