CX047408

Overview
NameCX047408
Unique NameCX047408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO4_ARATH (Oleosin 20.3 kDa OS=Arabidopsis thaliana GN=OL2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 3
Query:   84 QSRQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLA 401
            +SR P ++Q          GG+LL L+GLT+AG+VI L ++ PL ++ SPV+VPA +T+ L + G LASG FG+  +S +SW+  Y+ G      +QL+ A+ ++A
Sbjct:   43 KSRGPSTNQILALIAGVPIGGTLLTLAGLTLAGSVIGLLVSIPLFLLFSPVIVPAALTIGLAVTGILASGLFGLTGLSSVSWVLNYLRGTSDTVPEQLDYAKRRMA 148          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO2_SOYBN (P24 oleosin isoform B OS=Glycine max PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.411e-17
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   90 RQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAEQ 437
            R P + Q          GG LL+L+GLT+AGT+  L +ATPL +I SPVL+PA + + L + GFL SG FG+ A+S  SWI  Y+    P   +    A+  LA  A  +  + ++
Sbjct:   48 RGPTTSQVLAVVAGLPVGGILLLLAGLTLAGTLTGLVVATPLFIIFSPVLIPATVAIGLAVAGFLTSGVFGLTALSSFSWILNYIRETQPASENLAAAAKHHLAEAAEYVGQKTKE 163          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLES2_BRANA (Oleosin S2-2 OS=Brassica napus GN=S2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.149e-17
Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 3
Query:   42 DMAEHYQPHEQTQLQSRQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLA 401
            D+   Y    +   +S  P S+Q          GGSLL L+GLT+AG+VI L ++ PL ++ SPV+VPA IT+ L +   LASG FG+  +S +SW+  Y+ G      +QL+ A+ ++A
Sbjct:   26 DVGYGYGYGGRADYKSSGPSSNQIVALIVGVPVGGSLLALAGLTLAGSVIGLMLSVPLFLLFSPVIVPAAITIGLAVTAILASGLFGLTGLSSVSWVLNYLRGTSDTVPEQLDYAKRRMA 145          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO5_ARATH (Oleosin 5 OS=Arabidopsis thaliana GN=At3g01570 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.372e-17
Identity = 47/115 (40.87%), Postives = 69/115 (60.00%), Query Frame = 3
Query:   96 PRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYV--TGGHPPGADQLEQARMKLASKAREMRDRAE 434
            P S Q          GG+LL ++GLT+AG+VI L +A PL +I SPV+VPA   + L + GFLASG  G+  +S +SW+  Y+   G H P  ++LE+A+ +LA  A  +  R +
Sbjct:   32 PSSTQVLAVFVGVPIGGTLLTIAGLTLAGSVIGLMLAFPLFLIFSPVIVPAAFVIGLAMTGFLASGAIGLTGLSSMSWVLNYIRRAGQHIP--EELEEAKHRLADMAEYVGQRTK 144          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO2_ARATH (Oleosin 21.2 kDa OS=Arabidopsis thaliana GN=At5g40420 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.197e-16
Identity = 41/86 (47.67%), Postives = 60/86 (69.77%), Query Frame = 3
Query:  144 GSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLA 401
            GSLL L+GL +AG+VI L +A PL ++ SPV+VPA +T+ L + GFLASG FG+  +S +SW+  Y+ G      +QLE A+ ++A
Sbjct:   65 GSLLALAGLLLAGSVIGLMVALPLFLLFSPVIVPAALTIGLAMTGFLASGMFGLTGLSSISWVMNYLRGTRRTVPEQLEYAKRRMA 150          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO6_GOSHI (Oleosin 18.2 kDa OS=Gossypium hirsutum GN=MATP6-A PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.757e-16
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 3
Query:   96 PRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWI---YRYVTG 350
            P + Q          GG+LL L+GLT+AGTVI L +ATPL +I SPVLVPA I +++ + GFL+SG FG+  +S LS++    RY TG
Sbjct:   38 PSTSQVLAVLTLLPIGGTLLALAGLTLAGTVIGLMLATPLFIIFSPVLVPAAIAIAMAVTGFLSSGAFGLTGLSSLSYVLNRLRYATG 125          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO7_GOSHI (Oleosin 16.4 kDa OS=Gossypium hirsutum GN=MATP7 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.257e-15
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 3
Query:   69 EQTQLQSRQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWI---YRYVTGGHPPGADQLEQ 383
            ++T  QS  P + Q          GG+LL L+GLT+ GTVI L +ATPL VI SPVLVPA I V + + GFL+SG FG+  +S LS++   +R  TG     AD+ ++
Sbjct:   18 DRTNYQSG-PSTTQVLTVLTLLPIGGTLLALAGLTLTGTVIGLCMATPLFVIFSPVLVPAAIAVFMAVAGFLSSGAFGLTGLSSLSYVFNRFRQATGTEQLDADRAKR 124          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLES1_BRANA (Oleosin S1-2 OS=Brassica napus GN=S1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.028e-15
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 3
Query:   96 PRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAE 434
            P S Q          GG+LL L+GLT+A +VI L +A PL +I SPV+VPA   + L + GF+ASG  G+  +S +SW+  ++        D+L++A+ +LA  A     R +
Sbjct:   32 PSSTQVLAVVAGVPVGGTLLTLAGLTLAVSVIGLILAFPLFLIFSPVIVPAAFVIGLAMTGFMASGAIGLTGLSSMSWVLNHIRRVRERIPDELDEAKQRLADMAEYAGQRTK 144          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO2_ORYSJ (Oleosin 18 kDa OS=Oryza sativa subsp. japonica GN=OLE18 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.463e-14
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 3
Query:   81 LQSRQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAEQ 437
            L  + P + Q          GG LLVLSGL +A +V+ L +ATP+ +I SPVLVPA + + L + GFL SG  G+  +S L+++            D +EQAR ++A  A     +  Q
Sbjct:   26 LPEKAPSASQALTVATLFPLGGLLLVLSGLALAASVVGLAVATPVFLIFSPVLVPAALLIGLAVAGFLTSGALGLGGLSSLTFLANTARQAFQRTPDYVEQARRRMAEAAAHAGHKTAQ 144          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO2_ORYSI (Oleosin 18 kDa OS=Oryza sativa subsp. indica GN=OLE18 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.463e-14
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 3
Query:   81 LQSRQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAEQ 437
            L  + P + Q          GG LLVLSGL +A +V+ L +ATP+ +I SPVLVPA + + L + GFL SG  G+  +S L+++            D +EQAR ++A  A     +  Q
Sbjct:   26 LPEKAPSASQALTVATLFPLGGLLLVLSGLALAASVVGLAVATPVFLIFSPVLVPAALLIGLAVAGFLTSGALGLGGLSSLTFLANTARQAFQRTPDYVEQARRRMAEAAAHAGHKTAQ 144          
The following BLAST results are available for this feature:
BLAST of CX047408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
OLEO4_ARATH1.414e-1740.57Oleosin 20.3 kDa OS=Arabidopsis thaliana GN=OL2 PE... [more]
OLEO2_SOYBN2.411e-1738.79P24 oleosin isoform B OS=Glycine max PE=2 SV=1[more]
OLES2_BRANA3.149e-1738.33Oleosin S2-2 OS=Brassica napus GN=S2 PE=1 SV=1[more]
OLEO5_ARATH5.372e-1740.87Oleosin 5 OS=Arabidopsis thaliana GN=At3g01570 PE=... [more]
OLEO2_ARATH1.197e-1647.67Oleosin 21.2 kDa OS=Arabidopsis thaliana GN=At5g40... [more]
OLEO6_GOSHI7.757e-1648.86Oleosin 18.2 kDa OS=Gossypium hirsutum GN=MATP6-A ... [more]
OLEO7_GOSHI2.257e-1544.44Oleosin 16.4 kDa OS=Gossypium hirsutum GN=MATP7 PE... [more]
OLES1_BRANA5.028e-1537.17Oleosin S1-2 OS=Brassica napus GN=S1 PE=1 SV=1[more]
OLEO2_ORYSJ1.463e-1436.13Oleosin 18 kDa OS=Oryza sativa subsp. japonica GN=... [more]
OLEO2_ORYSI1.463e-1436.13Oleosin 18 kDa OS=Oryza sativa subsp. indica GN=OL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14A06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A06-B11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047408 ID=CX047408; Name=CX047408; organism=Citrus sinensis; type=EST; length=766bp
ATCATCGACAAATAATCGCCGTTAGATTTAACATCAACACTGATATGGCT
GAACATTACCAACCACACGAGCAGACACAGCTGCAGAGCCGTCAGCCCCG
GTCCCACCAGGTCGTGAAGGCGGCAACCGCCGTCACAGCCGGTGGGTCTC
TGTTGGTCCTCTCTGGCTTAACCATGGCTGGGACTGTCATTGCACTGACC
ATTGCTACTCCACTGCTAGTCATATGTAGTCCTGTTCTTGTCCCTGCGGT
TATCACCGTTTCTCTTCTCATCATGGGGTTCTTGGCCTCTGGCGGATTCG
GTGTAGCAGCCATCAGCGTCTTATCATGGATTTATAGGTATGTCACAGGG
GGGCACCCACCAGGGGCGGATCAGCTGGAGCAGGCGCGGATGAAGCTGGC
CAGTAAGGCTAGGGAGATGAGGGACAGGGCTGAGCAGTTTGGGCAGCAGC
AAAGCACTGGCTCGCAGCCGGGTTCTTAAACTACGTAGTTATGCATGTGA
TGAAGGGTTGTTGGTTGATAAAGATATGGGTGGAGATCAAACGGCTATGA
TACTAGTTGAGGGGTCATTGGTTGTCTTTTGTGTTAATTTGTGTCAATGT
GTTTTTTCCTTTTTTGTATTCGTGGTAATCTTTGTAATAAGTTTTGTTAA
TGTGGTGGGGCGCTCTTGCAGGGTTTTTATTATTGGTCTTTGAAATGTAA
TATGTCTTGTGATTTTTGTTTTAACTTTTCAGTTTCTTTAATTTTACAAA
ATTTGGTTGTTATTAA
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