CX047408

Overview
NameCX047408
Unique NameCX047408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO_HELAN (Oleosin (Fragment) OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.257e-14
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 3
Query:   39 TDMAEHYQPHEQTQL--QSRQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYV--TGGHPP 362
            T    HY+  ++++   Q+    + +          GG LL L+ LT  GT+I L +ATPL VI SP++VPAV+T+ L + GFLASG FG+  +S LS+++  V  T G  P
Sbjct:   10 TTTQPHYRQDDRSRYDQQTHSQSTSRTLAIIALLPVGGILLGLAALTFIGTLIGLALATPLFVIFSPIIVPAVLTIGLAVTGFLASGTFGLTGLSSLSYLFNMVRQTAGSVP 121          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLEO3_MAIZE (Oleosin Zm-II OS=Zea mays GN=OLE18 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.483e-14
Identity = 41/119 (34.45%), Postives = 62/119 (52.10%), Query Frame = 3
Query:   81 LQSRQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAEQ 437
            L  + P + Q          GG LLVLSGL +  +V+ L +ATP+ +I SPVLVPA + +   +MGFL SG  G+  +S L+ +            D +E+AR ++A  A +   +  Q
Sbjct:   39 LHDKGPTASQALTVATLFPLGGLLLVLSGLALTASVVGLAVATPVFLIFSPVLVPAALLIGTAVMGFLTSGALGLGGLSSLTCLANTARQAFQRTPDYVEEARRRMAEAAAQAGHKTAQ 157          
BLAST of CX047408 vs. ExPASy Swiss-Prot
Match: OLNB1_BRANA (Oleosin-B1 OS=Brassica napus GN=OlnB1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.027e-13
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  150 LLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPP 362
            LL++SG+++AGT  A     PL V+ SP+LVPA IT  LL  G  A+GG G  A++++ W+Y+  TG  PP
Sbjct:   31 LLLISGVSLAGTAAAFIATMPLFVVFSPILVPAGITTGLLTTGLAAAGGAGATAVTIILWLYKRATGKEPP 101          
The following BLAST results are available for this feature:
BLAST of CX047408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
OLEO_HELAN4.257e-1439.29Oleosin (Fragment) OS=Helianthus annuus PE=2 SV=1[more]
OLEO3_MAIZE9.483e-1434.45Oleosin Zm-II OS=Zea mays GN=OLE18 PE=1 SV=1[more]
OLNB1_BRANA8.027e-1346.48Oleosin-B1 OS=Brassica napus GN=OlnB1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14A06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A06-B11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047408 ID=CX047408; Name=CX047408; organism=Citrus sinensis; type=EST; length=766bp
ATCATCGACAAATAATCGCCGTTAGATTTAACATCAACACTGATATGGCT
GAACATTACCAACCACACGAGCAGACACAGCTGCAGAGCCGTCAGCCCCG
GTCCCACCAGGTCGTGAAGGCGGCAACCGCCGTCACAGCCGGTGGGTCTC
TGTTGGTCCTCTCTGGCTTAACCATGGCTGGGACTGTCATTGCACTGACC
ATTGCTACTCCACTGCTAGTCATATGTAGTCCTGTTCTTGTCCCTGCGGT
TATCACCGTTTCTCTTCTCATCATGGGGTTCTTGGCCTCTGGCGGATTCG
GTGTAGCAGCCATCAGCGTCTTATCATGGATTTATAGGTATGTCACAGGG
GGGCACCCACCAGGGGCGGATCAGCTGGAGCAGGCGCGGATGAAGCTGGC
CAGTAAGGCTAGGGAGATGAGGGACAGGGCTGAGCAGTTTGGGCAGCAGC
AAAGCACTGGCTCGCAGCCGGGTTCTTAAACTACGTAGTTATGCATGTGA
TGAAGGGTTGTTGGTTGATAAAGATATGGGTGGAGATCAAACGGCTATGA
TACTAGTTGAGGGGTCATTGGTTGTCTTTTGTGTTAATTTGTGTCAATGT
GTTTTTTCCTTTTTTGTATTCGTGGTAATCTTTGTAATAAGTTTTGTTAA
TGTGGTGGGGCGCTCTTGCAGGGTTTTTATTATTGGTCTTTGAAATGTAA
TATGTCTTGTGATTTTTGTTTTAACTTTTCAGTTTCTTTAATTTTACAAA
ATTTGGTTGTTATTAA
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