CX047407

Overview
NameCX047407
Unique NameCX047407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1
Query:   13 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 255
            A  E + FVGGL++ T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   22 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 255
            E + FVGGL++ T +  L   FS YG I E  ++ DRET RSRGFGFVTF + +  +DA+ GMNG+ +DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1
Query:   13 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 255
            A  E + FVGGL++ T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1
Query:   13 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 255
            A  E + FVGGL++ T + +L + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   22 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 255
            E + F+GGL + T + SL + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+ +DGR I V++A
Sbjct:    4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81          
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   22 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 255
            E + F+GGL + T +  L +AF+ YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81          
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 34/77 (44.16%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   28 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 258
            R +VG L+W   D +L   FS  G ++E+++I DR++GRS+GFGFVT+   + +++AI+ ++G +LDGR I V+EA+
Sbjct:  205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281          
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   22 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 255
            E + FVGGL + T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +   DA+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82          
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   28 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 258
            R +VG L+W   D +L   F+  G ++E+++I DR++GRS+GFGFVT    + ++ AI  +NG +LDGR I V+EA+
Sbjct:  258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334          
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   22 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 255
            E + FVGGL + T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +   D +  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82          
The following BLAST results are available for this feature:
BLAST of CX047407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CIRBP_RAT1.091e-1549.38Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_RANCA1.091e-1551.28Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
CIRBP_MOUSE1.091e-1549.38Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR1.091e-1549.38Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
CIRBB_XENLA2.432e-1550.00Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
CIRBA_XENLA5.417e-1548.72Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
ROC1_ARATH7.075e-1544.16Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
RBM3_MOUSE9.240e-1548.72Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
ROC2_ARATH1.576e-1444.1629 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
RBM3_RAT2.688e-1447.44Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14A04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A04-B7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047407 ID=CX047407; Name=CX047407; organism=Citrus sinensis; type=EST; length=684bp
CTAATGGCTTCAGCCGATGTCGAGTTTCGGTGCTTCGTAGGCGGCCTGGC
CTGGGCCACCACTGACAGCTCTCTCCATGAGGCCTTCAGTGCTTACGGCG
ATATCCTTGAATCGAAGATTATTAACGATCGCGAGACTGGAAGATCCAGA
GGATTTGGATTCGTTACCTTCCGCGATGAGAAGTCGATGAGGGACGCAAT
CGAAGGCATGAACGGCCAGAATCTGGACGGCCGTAACATAACAGTCAACG
AGGCCCAGTCCCGTGGAAGCGGTGGCGGTGGCGGTGGCGGTTACGGAAGC
CGTGGCGGTGGTGGATATGGAGGTGGTGGACGCCGTGAAAGTGGTGGTGG
CGGTGGATACGGTGGGAGCCGCGGATACGGAGGTGGCGGCGGTGGATATG
GTGGCCGCCGTGAAGGTGGTTACAGCCGTGACGGTGGATATGGCGGTGAT
GGTGGTTCCCGATACTCAAGGAGCGGTGCTTCTGATGGCGGTAGCTGGAG
GAACTAGGGTTTTGTAGGATAAATTAGGAGTTGAATGTTACCGTTCCGTG
TTTTGATATTTTCCTTGGGTTATGATGTGTCGTTTTGATCGGTTCCTGTT
ATCCTGTGTTGTTTCGTTCTCCCTGTTTGGTTAATTGTTTGAAAAAAAAA
ATGAAATGAATTACAGTTCTTTTCAAAAAAACCT
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