CX047407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11 Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1 Query: 28 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 255 + FVGGL + TTD+SL + F +GDI E+ +I DR+TG+SRG+GFVT D + A + N +DGR VN A Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPN-PIIDGRKANVNLA 107
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11 Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1 Query: 28 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 255 + FVGGL + TTDSSL + F +G+I E+ +I DR+TG+SRG+GFVT D + A + N +DGR VN A Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPN-PIIDGRKANVNLA 86
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11 Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 28 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 255 + F+GGL W TTD SL + F +G++L+ ++ D TGRSRGFGF+TF++ K + + + +LDG+ I A Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS--KEHHLDGKIIDPKRA 237
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11 Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1 Query: 28 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 255 + FVGGL + TTD+SL + F +G+I E+ +I DR+TG+SRG+GFVT D + A + N +DGR VN A Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11 Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 16 DVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNG-QNLDGRNI 240 D + FVGGL+W TT +L F +GDI++ ++ + E+GRSRGFGFVTF D ++ ++ NG LDGR I Sbjct: 4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ--NGPHTLDGRTI 77
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11 Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 7 ASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNI 240 A AD + FVGGL W+TT +L FS YG++++ I+ D+ T +SRGFGFV F+D + + LDGRNI Sbjct: 4 AGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV-GTVLASRPHTLDGRNI 80
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11 Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 28 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 255 + FVGGL + TTD+SL + F +GDI E+ +I DR+T +SRG+GFVT D + A + N +DGR VN A Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86
BLAST of CX047407 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3) HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11 Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 1 Query: 28 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNI 240 + F+GGL+W T+ SL + F YGDI E+ ++ D T RSRGFGFVTF D S+ D + LDG+ + Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSV-DKVLTQGTHELDGKKV 99 The following BLAST results are available for this feature:
BLAST of CX047407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >CX047407 ID=CX047407; Name=CX047407; organism=Citrus sinensis; type=EST; length=684bpback to top |