CX047405

Overview
NameCX047405
Unique NameCX047405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047405 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.605e-34
Identity = 81/209 (38.76%), Postives = 114/209 (54.55%), Query Frame = -3
Query:  253 KMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKC-QFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNA--IFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPFWIIKNSWGKQWGDHGYYRLCRG----RGMCGM 858
            K QG CGSCWAFST  AVEG N I TG L+SLSEQ+LVDCD S         + GC+GGLM  A+++++  GGL  E  YPY G  GKC         V +  + ++P  +       V + P+++ ++A     Q Y  G+     CG   ++H V+ VGYG++           +WI++NSWG +WG+ GY R+ R      G CG+
Sbjct:  116 KDQGTCGSCWAFSTAAAVEGINKIVTGELVSLSEQELVDCDKS--------YNQGCNGGLMDYAFQFIMKNGGLNTEKDYPYHGTNGKCNSLLKNSRVVTIDGYEDVPSKDETALKRAVSYQPVSVAIDAGGRAFQHYQSGIFTGK-CGTN-MDHAVVAVGYGSE-------NGVDYWIVRNSWGTRWGEDGYIRMERNVASKSGKCGI 307          
BLAST of CX047405 vs. ExPASy Swiss-Prot
Match: CYSP2_HORVU (Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.605e-34
Identity = 85/209 (40.67%), Postives = 117/209 (55.98%), Query Frame = -3
Query:  256 KMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDN-GCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQF----DSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNA---IFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPFWIIKNSWGKQWGDHGYYRLCRGRGMCG 858
            K QG CGSCWAFST  +VEG N I TG+L+SLSEQ+L+DCD         T DN GC GGLM NA++Y+   GGL  E++YPY   RG C       +  + V +    ++P +  +  A  V + P+++ + A    FM  Y  GV     CG + L+HGV +VGYG      +    + +W +KNSWG  WG+ GY R+ +  G  G
Sbjct:  150 KDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD---------TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFM-FYSEGVFTG-ECGTE-LDHGVAVVGYG------VAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASG 340          
BLAST of CX047405 vs. ExPASy Swiss-Prot
Match: CYSP1_HORVU (Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=EPB1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.605e-34
Identity = 85/209 (40.67%), Postives = 117/209 (55.98%), Query Frame = -3
Query:  256 KMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDN-GCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQF----DSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNA---IFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPFWIIKNSWGKQWGDHGYYRLCRGRGMCG 858
            K QG CGSCWAFST  +VEG N I TG+L+SLSEQ+L+DCD         T DN GC GGLM NA++Y+   GGL  E++YPY   RG C       +  + V +    ++P +  +  A  V + P+++ + A    FM  Y  GV     CG + L+HGV +VGYG      +    + +W +KNSWG  WG+ GY R+ +  G  G
Sbjct:  150 KDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD---------TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFM-FYSEGVFTG-DCGTE-LDHGVAVVGYG------VAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASG 340          
BLAST of CX047405 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 80/209 (38.28%), Postives = 117/209 (55.98%), Query Frame = -3
Query:  253 KMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKC-QFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNA--IFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPFWIIKNSWGKQWGDHGYYRLCR----GRGMCGM 858
            K QG+CGSCWAFS   A+E  N I TGNL+SLSEQ+LVDCD S         + GC GGLM  A++++I  GG++ E  YPY  + G C Q+      V++ ++ ++PV+  +     V H P++I L A     Q Y  G+     CG   ++HGV++ GYG +           +WI++NSWG    ++GY R+ R      G+CG+
Sbjct:   34 KDQGSCGSCWAFSAVAAMESINAIVTGNLISLSEQELVDCDRS--------YNEGCDGGLMDYAFEFVIKNGGIDTEEDYPYKERNGVCDQYRKNAKVVKIDSYEDVPVNNEKALQKAVAHQPVSIALEAGGRDFQHYKSGIFTGK-CGTA-VDHGVVIAGYGTE-------NGMDYWIVRNSWGANCRENGYLRVQRNVSSSSGLCGL 225          
BLAST of CX047405 vs. ExPASy Swiss-Prot
Match: CATK_CANFA (Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 82/211 (38.86%), Postives = 117/211 (55.45%), Query Frame = -3
Query:  238 KMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEKIAVRVANFTNIPV-DENQIAAHLVHHGPLAIGLNAIF--MQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPFWIIKNSWGKQWGDHGYYRLCRGR-GMCGMNTMVS 858
            K QG CGSCWAFS+ GA+EG     TG LL+LS Q LVDC     + E    ++GC GG MTNA++Y+    G++ E +YPY+G+   C ++    A +   +  IP  +E  +   +   GP+++ ++A     Q Y  GV     C    LNH VL VGYG      ++ GN+  WIIKNSWG+ WG+ GY  + R +   CG+  + S
Sbjct:  132 KNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-----VSE----NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPISVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYG------IQKGNK-HWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 326          
BLAST of CX047405 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 82/215 (38.14%), Postives = 119/215 (55.35%), Query Frame = -3
Query:  238 KMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFD--SEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNA---IFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPFWIIKNSWGKQWGDHGYYRLCR---GRGMCGMNTMVS 858
            K QG CG CWAFS    VEG N I TG L+SLSEQ+L+DC  + + +       GC+GG +T+ ++++I  GG+  E +YPY  + G+C  D  +EK  V +  + N+P +        V + P+++ L+A    F Q   G  + P  CG   ++H V +VGYG +       G   +WI+KNSW   WG+ GY R+ R   G G CG+ TM S
Sbjct:  143 KSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTR-------GCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKY-VTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGP--CGTA-VDHAVTIVGYGTE-------GGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPS 339          
BLAST of CX047405 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.297e-33
Identity = 86/242 (35.54%), Postives = 118/242 (48.76%), Query Frame = -3
Query:  238 KMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDN-GCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGK-CQFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAIF--MQTYIGGVSCPLICGKKWLNHGVLLVGYGAKG------------------------------FSILRLGNQPFWIIKNSWGKQWGDHGYYRLCRGR-GMCGMNTMVS 858
            K QG CGSCW+FSTTG+ EGA+ + T  L+SLSEQ LVDC         G  +N GC GGLM NA+ Y+I   G++ ESSYPY  + G  C F+   I   +  + NI         +   HGP+++ ++A     Q Y  G+     C    L+HGVL+VGYG +G                                 +R     +WI+KNSWG  WG  GY  + + R   CG+ ++ S
Sbjct:  139 KDQGQCGSCWSFSTTGSTEGAHALKTKKLVSLSEQNLVDC--------SGPEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSS 372          
BLAST of CX047405 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.297e-33
Identity = 76/203 (37.44%), Postives = 111/203 (54.68%), Query Frame = -3
Query:  253 KMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEKIAVRVAN-FTNIPVDENQIAAHLVHHGPLAIGLNAIFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPFWIIKNSWGKQWGDHGYYRLCRGRGMCGM 858
            K QG CG+CWAF+T G++E    I    L++LSEQQL+DCD           D GC GGL+  AY+ ++  GG++ E+ YPY    G C+ ++ K  V+V   +  + + E ++   L   GPL + ++A  +  Y  GV     C    LNH VLLVGY  +          PFWI+KN+WG  WG+ GY+R+ +    CG+
Sbjct:  129 KNQGTCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCDF---------VDMGCDGGLLHTAYEAVMNMGGIQAENDYPYEANNGDCRLNAAKFVVKVKKCYRYVLMFEEKLKDLLRIVGPLPVAIDASDIVNYKRGVI--RYCANHGLNHAVLLVGYAVE-------NGVPFWILKNTWGTDWGEQGYFRVQQNINACGI 313          
BLAST of CX047405 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.297e-33
Identity = 76/203 (37.44%), Postives = 112/203 (55.17%), Query Frame = -3
Query:  253 KMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEKIAVRVAN-FTNIPVDENQIAAHLVHHGPLAIGLNAIFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPFWIIKNSWGKQWGDHGYYRLCRGRGMCGM 858
            K QG CG+CWAF+T G++E    I    L++LSEQQL+DCD           D GC GGL+  AY+ ++  GG++ E+ YPY    G C+ ++ K  VRV   +  + + E ++   L   GP+ + ++A  +  Y  G+     C    LNH VLLVGYG +          PFWI+KN+WG  WG+ GY+R+ +    CG+
Sbjct:  129 KNQGMCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCDF---------VDVGCDGGLLHTAYEAVMNMGGIQAENDYPYEANNGPCRVNAAKFVVRVKKCYRYVTLFEEKLKDLLRIVGPIPVAIDASDIVGYKRGII--RYCENHGLNHAVLLVGYGVE-------NGIPFWILKNTWGADWGEQGYFRVQQNINACGI 313          
BLAST of CX047405 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.297e-33
Identity = 76/199 (38.19%), Postives = 113/199 (56.78%), Query Frame = -3
Query:  268 KMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAI--FMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPFWIIKNSWGKQWGDHGYYRLCRGR 858
            + QG C SCWAF  TGA+EG  F  TG L+ LS Q L+DC      K +G  + GC  G   NA++Y++  GGLE E++YPY  K G C+++ +  + ++  F  +P  E+ +   +   GP+A G++ I    + Y  GV     C   ++NH VL+VGYG +G          +W+IKNSWGK+WG  GY ++ + R
Sbjct:  141 RKQGGCSSCWAFPVTGAIEGQMFKKTGKLIPLSVQNLIDCS-----KPQG--NRGCLWGNTYNAFQYVLHNGGLEAEATYPYERKEGVCRYNPKNSSAKITGFVVLPESEDVLMDAVATKGPIATGVHVISSSFRFYQKGVYHEPKC-SSYVNHAVLVVGYGFEG---NETDGNNYWLIKNSWGKRWGLRGYMKIAKDR 328          
The following BLAST results are available for this feature:
BLAST of CX047405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
CYSP4_BRANA7.605e-3438.76Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CYSP2_HORVU7.605e-3440.67Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=E... [more]
CYSP1_HORVU7.605e-3440.67Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=E... [more]
CYSPL_SOLLC9.933e-3438.28Low-temperature-induced cysteine proteinase (Fragm... [more]
CATK_CANFA9.933e-3438.86Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1[more]
ACTN_ACTCH9.933e-3438.14Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
CYSP2_DICDI1.297e-3335.54Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]
CATV_NPVCD1.297e-3337.44Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CATV_NPVAP1.297e-3337.44Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATQ_RAT1.297e-3338.19Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14A03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A03-B5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047405 ID=CX047405; Name=CX047405; organism=Citrus sinensis; type=EST; length=860bp
TTTTTTTTTTTTTTTTTAGAAGAGCAGGTCTGAAAAGCATTTTCAACTCT
AATCCAGAACTTACTTGAGAAAAGGGAATTATGAAACCGGAAAAGCTTCA
ATAATTAGAAGATCACGAACAAGAACAAAAGGGAAACTAGCTACCATTTA
ACATGAGCTGTCTATATTGCTTTCTGTAGATATTCCAACTTAATAAGAGG
GACTTCAAGTTTAGGAGGAGGCTTGAGTGACCACTGCAGAAACCATGGTG
TTCATTCCACACATGCCACGCCCTCGGCAGAGCCGGTAGTACCCATGGTC
TCCCCATTGCTTGCCCCACGAATTCTTGATGATCCAAAACGGCTGGTTTC
CAAGCCTAAGAATTGAGAAGCCCTTGGCACCATACCCGACAAGCAGAACG
CCGTGGTTGAGCCATTTCTTGCCGCAGATTAGGGGGCATGAGACTCCCCC
AATGTATGTTTGCATGAATATAGCGTTCAACCCAATAGCCAGAGGACCGT
GGTGGACTAAATGTGCAGCAATTTGGTTCTCATCGACAGGAATATTGGTA
AAATTTGCAACTCGAACGGCTATTTTCTCTGAATCGAATTGGCATTTGCC
ACGCTTCCCAATATAAGGATATGAACTCTCCTCTTCTAGCCCTCCAGCCG
CGATCAAATATTTGTATGCATTTGTCATGAGGCCTCCAGAACAACCATTG
TCACAAGTACCCTTCTCCTTTATATCACACGAGTGATCACAATCTACAAG
CTGCTGCTCGCTAAGACTCAGAAGATTCCCAGTCGCAATGAAGTTGGCTC
CTTCAACAGCTCCTGTAGTGCTAAAAGCCCAGCATGACCCACATGCTCCC
TGCATCTTGA
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