CX047404

Overview
NameCX047404
Unique NameCX047404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: CATL2_PARTE (Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT00022898001 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.137e-22
Identity = 68/202 (33.66%), Postives = 97/202 (48.02%), Query Frame = 3
Query:  156 TENNFKIFMQKYEKSYATREDYVHRLGIFAKNM--IRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGMKGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVT--EVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQ 749
            T N +  +  KY + Y ++ D ++R  +F+ N+  IRA +      T    +  F+D+S++EF S Y  ++            +   K  E+D       W D   V    VK QG+CGSCWAFS  GA+E    I       LSEQ LVDC    D       + GC+GG M +A++Y +A  GL E   YPY  K G C+
Sbjct:   22 TANLYANWKMKYNRRYTSQRDEMYRFKVFSDNLNYIRAFQDSTESATYTLELNQFADMSQQEFASTYLSLRVPKTAKLNASNANFQYKGAEVD-------WTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNKKYELSEQDLVDCSGPYD-------NEGCNGGWMDSAFEY-VADNGLAEAKDYPYTAKDGTCK 208          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.485e-22
Identity = 73/224 (32.59%), Postives = 111/224 (49.55%), Query Frame = 3
Query:  120 TDNPGHLLLGSATENNFKIFMQKYEKSYATREDYVHRLGIFAKNMI------RAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGMKGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEKIAV 773
            T++ G        E  +K ++    K Y  +E+   R+ IF  N +      +  E  L+  T    +   +DL++EEF            ++ G    S   +  + + LP+  DWR KGAVT V+ QG CGSC+AF+T  A+E  +   TG LL LS Q +VDC  +         +NGCSGG M  A++Y  +  G+  ES YPY+G   +C++  + IAV
Sbjct:   75 TEDNGEQRAMEKLETEWKDYVTALGKHYDQKENNF-RMAIFESNELMTERINKKYEQGLVSYTTA--LNDLADLTDEEFMVRNGLRLPNQTDLRGKRQTSEFYRYDKSERLPDQVDWRTKGAVTPVRNQGECGSCYAFATAAALEAYHKQMTGRLLDLSPQNIVDCTRNLG-------NNGCSGGYMPTAFQY-ASRYGIAMESRYPYVGTEQRCRW-QQSIAV 286          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: CATM_MOUSE (Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.532e-22
Identity = 71/196 (36.22%), Postives = 99/196 (50.51%), Query Frame = 3
Query:  186 KYEKSYATREDYVHRLGIFAKNMIRAAEHQLLDPTAVHGVT----PFSDLSEEEFESMYTGMKGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSE 761
            KY K+Y+  E+   R  ++  NM +   H   +    HG T     F D++ EEF  +   +    P +  G     SV+      LP+  +W+ +G VT V+ QG C SCWAFS TGA+EG  F  TG L+ LS Q LVDC      + +G    GC  G    A  Y++  GGLE E++YPY  K G C++  E
Sbjct:   35 KYGKAYSLEEEGQKR-AVWEDNMKKIKLHNGENGLGKHGFTMEMNAFGDMTLEEFRKVMIEIP--VPTVKKG----KSVQKRLSVNLPKFINWKKRGYVTPVQTQGRCNSCWAFSVTGAIEGQMFRKTGQLIPLSVQNLVDCS-----RPQGNW--GCYLGNTYLALHYVMENGGLESEATYPYEEKDGSCRYSPE 216          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: CATL1_PARTE (Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT00020990001 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.641e-22
Identity = 68/202 (33.66%), Postives = 95/202 (47.03%), Query Frame = 3
Query:  156 TENNFKIFMQKYEKSYATREDYVHRLGIFAKNM--IRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGMKGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVT--EVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQ 749
            T N +  +  KY + Y  + D ++R  +F  N+  IRA      + T    +  F+D+S++EF   Y  +K            +   K  E+D       W D   V    VK QG+CGSCWAFS  GA+E    I       LSEQ LVDC    D       ++GC+GG M +A++Y +A  GL E   YPY  K G C+
Sbjct:   22 TANLYANWKMKYNRRYTNQRDEMYRYKVFTDNLNYIRAFYESPEEATFTLELNQFADMSQQEFAQTYLSLKVPRTAKLNAANSNFQYKGAEVD-------WTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNRKYELSEQDLVDCSGPYD-------NDGCNGGWMDSAFEY-VADNGLAEAKDYPYTAKDGTCK 208          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: CATK_CHICK (Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.641e-22
Identity = 53/106 (50.00%), Postives = 65/106 (61.32%), Query Frame = 3
Query:  435 PENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQF 752
            P   DWR KG VT VK QG CGSCWAFS+ GA+EG     TG LLSLS Q LV C  +         +NGC GG MTNA++Y+    G++ E +YPYIG+   C +
Sbjct:  121 PAAVDWRRKGYVTPVKDQGQCGSCWAFSSVGALEGQLKRRTGKLLSLSPQNLVYCVSN---------NNGCGGGYMTNAFEYVRLNRGIDSEDAYPYIGQDESCMY 217          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.368e-22
Identity = 70/199 (35.18%), Postives = 98/199 (49.25%), Query Frame = 3
Query:  186 KYEKSYATREDYVHRLGIFAKNMIRAAEHQLLDPTAVHGVT----PFSDLSEEEFESMYTGMKGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEKIA 770
            K+ K+Y   E+ + R  ++ KN      H        H  T     F DL+  EF  M TG +    +      ++   +  +   +P+  DWR  G VT VK QG C S WAFS TG++EG  F  T  L+ LSEQ L+DC  S          +GCSGG M  A++Y+   GGL  E SYPY G+  +C++ +E  A
Sbjct:   35 KHGKTYNMNEERLKR-AVWEKNFKMIELHNWEYLEGRHDFTMAMNAFGDLTNIEFVKMMTGFQRQKIK------KTHIFQDHQFLYVPKRVDWRQLGYVTPVKNQGHCASSWAFSATGSLEGQMFRKTERLIPLSEQNLLDCMGS-------NVTHGCSGGFMQYAFQYVKDNGGLATEESYPYRGQGRECRYHAENSA 219          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: CPP1_ENTHI (Cysteine proteinase 1 OS=Entamoeba histolytica GN=CPP1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.043e-20
Identity = 64/191 (33.51%), Postives = 94/191 (49.21%), Query Frame = 3
Query:  207 TREDYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGMKGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATG---NLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEKIA 770
            T  + + R  IF  N    AE+   +   +    PF+ ++ EE+ S+         ++   G E   V+ + I   P+  DWR KG VT ++ QG CGSC+ F +  A+EG   I  G     L LSE+ +V C      +E G  +NGC+GGL +N Y Y I   G+ +ES YPY G    C+ D +  A
Sbjct:   28 TAVESLRRRAIFNMNARIVAENNRKETFKLSVDGPFAAMTNEEYNSLL--------KLKRSGEEKGEVRYLNIQA-PKAVDWRKKGKVTPIRDQGNCGSCYTFGSIAALEGRLLIEKGGDSETLDLSEEHMVQC-----TREDG--NNGCNGGLGSNVYNY-IMENGIAKESDYPYTGSDSTCRSDVKAFA 201          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: MDO1_PSEMR (Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.176e-19
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  432 LPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKC 746
            +P++ DWRD GAV EVK QG CG CWAF+    VEG   I  GNL+ LSEQ+++DC              GC GG +  AY ++I+  G+  + +YPY   +G C
Sbjct:    2 VPQSIDWRDYGAVNEVKNQGPCGGCWAFAAIATVEGIYKIRKGNLVYLSEQEVLDC----------AVSYGCKGGWVNRAYDFIISNNGVTTDENYPYRAYQGTC 96          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: PEPT1_PSOOV (Peptidase 1 OS=Psoroptes ovis PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19
Identity = 68/205 (33.17%), Postives = 100/205 (48.78%), Query Frame = 3
Query:  168 FKIFMQKYEKSYATREDYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYT----GMKGGPPEMD-GGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATGNL-LSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEK 764
            F+ F + + K Y T E          +N + + EH  ++      +  FSD+S EEF++ Y       +    E D   G ++  +  + I   P   D R  G VT++K Q ACGSCWAFS    VE +N+++  N+ L LSEQ+LVDC             +GC G  + N  +Y I   G+ EE SYPY  + G+CQ  + K
Sbjct:   26 FEEFKKAFNKHYVTPEAEQEA----RQNFLASLEH--IEKAGKGRINQFSDMSLEEFKNQYLMSDQAYEALKKEFDLDAGAQACQIGAVNI---PNEIDLRALGYVTKIKNQVACGSCWAFSGVATVE-SNYLSYDNVSLDLSEQELVDC----------ASQHGCGGDTVLNGLRY-IQKNGVVEEQSYPYKAREGRCQRPNAK 209          
BLAST of CX047404 vs. ExPASy Swiss-Prot
Match: CPP2_ENTHI (Cysteine proteinase 2 OS=Entamoeba histolytica GN=CPP2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.958e-19
Identity = 65/213 (30.52%), Postives = 101/213 (47.42%), Query Frame = 3
Query:  141 LLGSATENNFKIFMQKYEKSYATREDYVHRLGIFAKNMIRAAEHQLLDPTAVHGVTPFSDLSEEEFESMYTGMKGGPPEMDGGGLESSSVKMMEIDGLPENFDWRDKGAVTEVKMQGACGSCWAFSTTGAVEGANFIATG---NLLSLSEQQLVDCDHSCDIKEKGTCDNGCSGGLMTNAYKYLIAAGGLEEESSYPYIGKRGKCQFDSEKIA 770
            LL  A+  +F  +  K  K +   E  + R  IF  N         +    +    PF+ ++ EE+ ++    +           E+  VK + I   PE+ DWR +G VT ++ Q  CGSC+ F +  A+EG   I  G   N L LSE+ +V C      ++ G  +NGC+GGL +N Y Y+I   G+ +ES YPY G    C+ + +  A
Sbjct:    7 LLAIASAIDFNTWASKNNKHFTAIEK-LRRRAIFNMNAKFVDSFNKIGSFKLSVDGPFAAMTNEEYRTLLKSKRTTE--------ENGQVKYLNIQA-PESVDWRKEGKVTPIRDQAQCGSCYTFGSLAALEGRLLIEKGGDANTLDLSEEHMVQC-----TRDNG--NNGCNGGLGSNVYDYII-EHGVAKESDYPYTGSDSTCKTNVKSFA 201          
The following BLAST results are available for this feature:
BLAST of CX047404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CATL2_PARTE1.137e-2233.66Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CATL_BRUPA1.485e-2232.59Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
CATM_MOUSE2.532e-2236.22Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1[more]
CATL1_PARTE5.641e-2233.66Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CATK_CHICK5.641e-2250.00Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1[more]
TEST2_RAT7.368e-2235.18Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CPP1_ENTHI4.043e-2033.51Cysteine proteinase 1 OS=Entamoeba histolytica GN=... [more]
MDO1_PSEMR1.176e-1942.86Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=... [more]
PEPT1_PSOOV4.470e-1933.17Peptidase 1 OS=Psoroptes ovis PE=1 SV=1[more]
CPP2_ENTHI9.958e-1930.52Cysteine proteinase 2 OS=Entamoeba histolytica GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A03-B5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047404 ID=CX047404; Name=CX047404; organism=Citrus sinensis; type=EST; length=776bp
AGAAGATGGCAGCAACACAAAGCCCAGCTCTAACATGCGCCATCGGAGTA
ACCCTCTTGACCTACGCACTCACACTCTCTTCAGCTCTAGTTCCACAAAA
CCCGACCATACGCCAAGTCACAGACAATCCCGGTCATCTGCTTCTGGGAT
CTGCCACAGAGAACAACTTCAAGATTTTCATGCAGAAGTACGAGAAAAGC
TATGCTACTAGAGAGGACTACGTGCACCGGCTGGGGATTTTCGCCAAGAA
TATGATCAGGGCCGCTGAGCACCAGCTGCTCGATCCGACGGCTGTGCATG
GGGTCACCCCTTTCTCTGATTTGTCCGAGGAGGAGTTTGAGAGTATGTAC
ACTGGGATGAAAGGTGGGCCCCCTGAGATGGACGGTGGAGGTTTGGAGAG
TAGTAGTGTAAAGATGATGGAGATTGATGGATTGCCTGAGAATTTTGATT
GGAGAGACAAAGGTGCTGTCACTGAGGTCAAGATGCAGGGAGCATGTGGG
TCATGCTGGGCTTTTAGCACTACAGGAGCTGTTGAAGGAGCCAACTTCAT
TGCGACTGGGAATCTTCTGAGTCTTAGCGAGCAGCAGCTTGTAGATTGTG
ATCACTCGTGTGATATAAAGGAGAAGGGTACTTGTGACAATGGTTGTTCT
GGAGGCCTCATGACAAATGCATACAAATATTTGATCGCGGCTGGAGGGCT
AGAAGAGGAGAGTTCATATCCTTATATTGGGAAGCGTGGCAAATGCCAAT
TCGATTCAGAGAAAATAGCCGTTCGA
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