CX047403

Overview
NameCX047403
Unique NameCX047403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047403 vs. ExPASy Swiss-Prot
Match: CRT_CLOAB (3-hydroxybutyryl-CoA dehydratase OS=Clostridium acetobutylicum GN=crt PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 46/145 (31.72%), Postives = 76/145 (52.41%), Query Frame = -1 
Query:  305 CDFTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA-----VDDGHAGLQALGGDAPLIFYGPEEGSEGKTAFVERRRPDFLK 724
            CD  IA+ NA FGQ    +G      G+  +SRLVG   A+++ F A+   A+EA ++GLVN VV   +L     + + +I+ N+P A+++ K A+N      +D   A      G+     +  E+  +  TAF+E+R+ +  K
Sbjct:  119 CDIRIASSNARFGQPEVGLGITPGFGGTQRLSRLVGMGMAKQLIFTAQNIKADEALRIGLVNKVVEPSELMNTAKEIANKIVSNAPVAVKLSKQAINRGMQCDIDTALAFESEAFGEC----FSTEDQKDAMTAFIEKRKIEGFK 259
The following BLAST results are available for this feature:
BLAST of CX047403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CRT_CLOAB3.084e-1131.723-hydroxybutyryl-CoA dehydratase OS=Clostridium ac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14A01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A01-B1-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047403 ID=CX047403; Name=CX047403; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTCCACATGTCAAATTGAACCTCTTAGCTGAACTA
AAGTTTCTAAAATCTTTTATTCAAAGGTTGGTTGGTCTCTTTGACAACTG
AAAACGTGCAACTAACAAAAAAAACCAGGTCTGCATCCCACAAATAAAAT
ACAAATACAACGTTTTATCTCAAATTATCCCCCTCCATTATTTTTTGATC
TTGAAAAAAAAAAAAGGGCCACAAAACCACCCCCTGCCGAAAAAGTTTAT
GTTGTTGGTTAAAATTAAGCTAAAAAACAGCAAGCGCTAAGGTCGCCAAG
GAAATTTCAAAAAGTCGGGGCGTCTGCGTTCCACAAATGCTGTCTTCCCT
TCACTACCTTCCTCGGGGCCATAAAATATGAGGGGGGCATCTCCCCCAAG
GGCCTGGAGTCCAGCATGGCCATCATCAACTGCATTGAGAGCTGATTTGA
GCACTCTAATAGCAGTCGGACTGTTTCTTAGGATCTCTCGACTCCATTTA
ATTGTTTCTTGCTCTAACTTCTCTAGGGGAACAACAGTGTTCACAAGTCC
CATTTTCTCTGCCTCCTCAGCAGTGTAAAACCTTGCTAAAAACCACATTT
CACGTGCTTTTTTAGGCCCCACCAAACGTGACATGATGGAGCTTCCATAA
CCTGCATCAAAGCTTCCAACCTTAGGACCAGTTTGGCCAAAAATTGCGTT
ATCTGCTGCAATAGTAAAATCACAAAC
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