CX047400

Overview
NameCX047400
Unique NameCX047400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.506e-20
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 2
Query:   89 AQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNL-PELPSAQSHHLPASSA 370
            +  SS +   +GKGGP+N+   Y+GVRQR+WGKWVAEIREP +  R WLGTF T+ +AA AYD AA  LYG  A+LNL P  PS+ S    + SA
Sbjct:   33 SSTSSAQRKRKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLYGSRAQLNLTPSSPSSVSSSSSSVSA 127          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.275e-19
Identity = 53/122 (43.44%), Postives = 69/122 (56.56%), Query Frame = 2
Query:   47 LMGGIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPE--LPSAQSHHLPASSANCTQHVAQRRNQ 406
            L+G    KK ++   QA         K         Y+G+RQR WGKW AEIR+P +G+R WLGTFDT+ EAA AYDAAAR++ G  AK+N PE   PS  S   P++  N  Q    + N+
Sbjct:  100 LVGSAYAKKTVESAEQAE--------KSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTNNLQKSVAKPNK 213          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.275e-19
Identity = 55/131 (41.98%), Postives = 76/131 (58.02%), Query Frame = 2
Query:   83 KPAQASSRKGCMRGK------GGPENALCT-----YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSANCTQHVAQRRNQPQ--MIHNSGIT 436
            KPA +++ +G + GK      G  E +        Y+G+RQR WGKW AEIR+P  GAR+WLGTF T+ EAA AYDAAAR++ G  AK+N PE     +    +  AN  + VA+    P   ++ NS I+
Sbjct:   90 KPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQKPVAKPNPNPSPALVQNSNIS 220          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.405e-18
Identity = 46/76 (60.53%), Postives = 50/76 (65.79%), Query Frame = 2
Query:  122 GKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSH 349
            G G P      Y+GVRQR WGKWVAEIR P    RLWLGTFDT+ EAA+AYD AA KL G  A+LN P L    SH
Sbjct:  141 GSGVPSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSH 216          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.140e-18
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 2
Query:   65 EKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPEL--PSAQSHHLPASSANCT 379
            +K+Q  +P +   RK               Y+G+R+R WGKW AEIR+P +G R+WLGTF+T+ EAA+AYD AA+++ G  AKLN P+L  P   ++  P SS   T
Sbjct:   62 KKEQATEPGKRRKRKN-------------VYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRST 155          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.102e-18
Identity = 45/81 (55.56%), Postives = 52/81 (64.20%), Query Frame = 2
Query:  134 PENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSANC 376
            P +A   Y+GVRQR WGKWVAEIR+P    RLWLGTFDT+ EAA+AYD  A KL G  A+LN PEL   +    P     C
Sbjct:  180 PFSATKLYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFPELFLNKQEPTPVHQKQC 260          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.137e-18
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPE---LPSAQSHHLPASS 367
            Y+GVRQR WGKW AEIR+PN+ AR+WLGTFDT+ EAA+AYD AA +  G  AKLN PE   +   Q +  PA+S
Sbjct:   70 YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHIRVNPTQLYPSPATS 143          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.036e-17
Identity = 50/95 (52.63%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPEL-------PSAQSHHLP---ASSANCTQHVAQRRNQP 409
            Y+GVRQR WGKWVAEIR P    RLWLGTFDT+ EAA+AYD AA KL G  A+LN P L       PS    + P   A  A     +A+ +NQP
Sbjct:  143 YRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPALRYQTGSSPSDTGEYGPIQAAVDAKLEAILAEPKNQP 237          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.036e-17
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSANCTQHVAQRRNQP 409
            Y+GVRQR WGKW AEIR+P + AR+WLGTF+T+ EAA+AYD AA K  G  AKLN PE    Q      + ++  + V++  N P
Sbjct:   39 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPE--RVQGPTTTTTISHAPRGVSESMNSP 121          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.659e-17
Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELP-SAQSHHLPASSANCTQHVAQRR 400
            ++G+RQR WGKW AEIR+P +G R+WLGTF+++ EAA AYDA AR++ G  AK+N PE P +AQ     +++A   +   +++
Sbjct:  120 FRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPEAPTTAQKRRAGSTTAKAPKSSVEQK 202          
The following BLAST results are available for this feature:
BLAST of CX047400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
ABI4_ARATH1.506e-2054.74Ethylene-responsive transcription factor ABI4 OS=A... [more]
RAP22_ARATH1.275e-1943.44Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH1.275e-1941.98Ethylene-responsive transcription factor RAP2-12 O... [more]
RAP24_ARATH2.405e-1860.53Ethylene-responsive transcription factor RAP2-4 OS... [more]
RAP23_ARATH3.140e-1842.99Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF53_ARATH4.102e-1855.56Ethylene-responsive transcription factor ERF053 OS... [more]
EF112_ARATH9.137e-1859.46Ethylene-responsive transcription factor ERF112 OS... [more]
ERF55_ARATH2.036e-1752.63Ethylene-responsive transcription factor ERF055 OS... [more]
EF113_ARATH2.036e-1750.59Ethylene-responsive transcription factor ERF113 OS... [more]
ERF1_ORYSJ2.659e-1746.99Ethylene-responsive transcription factor 1 OS=Oryz... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_13H12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H12-O24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047400 ID=CX047400; Name=CX047400; organism=Citrus sinensis; type=EST; length=812bp
AAACGATCTTGTTTTCAGAGTCCTGTCTTAGGGAATGTCAAAAGCACTTA
TGGGTGGTATTGGAGAGAAAAAGCAGCTTAAGAAGCCTGCACAGGCTAGC
TCAAGGAAAGGTTGCATGAGAGGCAAAGGAGGCCCTGAGAATGCTCTTTG
TACTTACAAAGGTGTTCGACAGAGAACTTGGGGCAAATGGGTGGCCGAAA
TCCGTGAACCGAATCGCGGTGCACGTCTCTGGCTTGGGACATTTGACACT
TCCCATGAAGCCGCCGTGGCTTATGATGCTGCTGCTCGTAAACTTTACGG
CCCAGATGCCAAACTCAATTTGCCAGAGCTTCCATCAGCTCAATCTCATC
ACTTGCCAGCTTCTTCAGCCAATTGTACCCAGCATGTTGCTCAAAGGCGA
AATCAACCGCAAATGATCCACAATTCAGGTATCACTTGTTCATCAAACAG
CCCGCTTCCCAGGAGTAGTAATAATGATGCAACACAAGTTTACAATTTCA
ATTACAACAACTCAGCCATGTCTTTTCCTGATAATGGGAGCTTTGGGTCT
CATGGGAAGTTGGCTGAAAATGAAGTCAAATTCAGTCTGAATGAACAGGA
GACGGATGGATTTTGGGAGAATTTGAACGTGAATTCGCCTGTATTTGATG
AATCAATATGGGCAGAAGCAGCAATGTCCGTTGATTATCCAGTTATGGGC
GAACAAGGACTTCTTAATGGCAACTTTGTTGATGCAAGTGGCTGTGGGTG
GGATATGTTGCCGACTCCGTGGTGCGTTTGAGTATCTGACTTGGTGATTG
TCCATTCCAAGT
back to top