CX047400

Overview
NameCX047400
Unique NameCX047400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQ 343
            ++GVRQR WG WV+EIR P    R+WLGTF+T+  AA AYD AA  + G +AK N P + S +
Sbjct:    7 FRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPVVKSEE 69          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSANCTQHVAQ 394
            Y+GVR+R WG++ AEIR+P + +R+WLGTFDT  EAA AYD  A +  G  AK N P       +++ A   + TQ ++Q
Sbjct:   20 YRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP------CYNINAHCLSLTQSLSQ 93          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF19_ARATH (Ethylene-responsive transcription factor ERF019 OS=Arabidopsis thaliana GN=ERF019 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDA--KLNLPEL--PSAQSHHLPAS 364
            YKG+R+R WGKWV+EIR P    RLWLG+F T+  AAVA+D A   L+ PD+   LN P L  PS  S   P S
Sbjct:   14 YKGIRRRKWGKWVSEIRVPGTRDRLWLGSFSTAEGAAVAHDVAFFCLHQPDSLESLNFPHLLNPSLVSRTSPRS 87          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.737e-12
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 2
Query:   62 GEKKQLKKPAQASSRKGCMRG----KGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP 325
            GEK +         RK   +      GG ++    Y+GVR+R WG++ AEIR+P +  R+WLG+F+T  EAA AYD+AA +  G  A  N P
Sbjct:   18 GEKSKEVSDKGVKKRKNVTKALAVNDGGEKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.737e-12
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASS 367
            Y+GVRQR  GKWV+E+REPN+  R+WLGTF T+  AA A+D AA  L G  A LN  +  SA    +P S+
Sbjct:   48 YRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFAD--SAWRLRIPEST 116          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 2
Query:  122 GKGGPENALCTYKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP 325
            G GG E     Y+GVR+R WGK+ AEIR+  + G R+WLGTFDT+ +AA AYD AA  + G  A LN P
Sbjct:   11 GGGGAEQG--KYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFP 77          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF24_ARATH (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 45/107 (42.06%), Postives = 59/107 (55.14%), Query Frame = 2
Query:  155 YKGVRQR-TWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP----ELPSAQS---HHLPASSANCTQHVAQRRNQPQMIHN----SGITC 439
            Y+GVRQR    KWV+EIREP +  R+WLGTF T   AA+AYD AA  L G  A+LN P     LP+  S     + A++A+        R+   M +N    SG+ C
Sbjct:   15 YRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAELNFPNSVSSLPAPTSMSPADIQAAAASAAAAFGAARDAIVMANNNSQTSGVAC 121          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP 325
            Y+GVRQR WGK+ AEIR+P + GAR+WLGT++++ EAA+AY  AA ++ G  A LN P
Sbjct:  107 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFP 164          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP 325
            Y+GVR R WGK+ AEIR+P R G R+WLGTF+T+ EAA AYD  A +L G  A LN P
Sbjct:  137 YRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFP 194          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF26_ARATH (Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana GN=ERF026 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSA 370
            Y+G+R R+ GKWV+EIREP +  R+WLGT+ T   AA AYD AA  L G D  LN P+  S  S+ +P SS+
Sbjct:   90 YRGIRCRS-GKWVSEIREPKKTTRVWLGTYPTPEMAAAAYDVAALALKGGDTLLNFPD--SLGSYPIPLSSS 158          
The following BLAST results are available for this feature:
BLAST of CX047400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
SHN2_ARATH4.392e-1252.38Ethylene-responsive transcription factor SHINE 2 O... [more]
ERF76_ARATH4.392e-1245.00Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF19_ARATH4.392e-1252.70Ethylene-responsive transcription factor ERF019 OS... [more]
ERF77_ARATH5.737e-1240.22Ethylene-responsive transcription factor 10 OS=Ara... [more]
DRE1B_ARATH5.737e-1252.11Dehydration-responsive element-binding protein 1B ... [more]
ERF97_ARATH7.492e-1253.62Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF24_ARATH7.492e-1242.06Ethylene-responsive transcription factor ERF024 OS... [more]
ERF1_SOLLC7.492e-1256.90Ethylene-responsive transcription factor 1 OS=Sola... [more]
EF103_ARATH9.785e-1260.34Ethylene-responsive transcription factor 6 OS=Arab... [more]
ERF26_ARATH1.278e-1151.39Ethylene-responsive transcription factor ERF026 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H12-O24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047400 ID=CX047400; Name=CX047400; organism=Citrus sinensis; type=EST; length=812bp
AAACGATCTTGTTTTCAGAGTCCTGTCTTAGGGAATGTCAAAAGCACTTA
TGGGTGGTATTGGAGAGAAAAAGCAGCTTAAGAAGCCTGCACAGGCTAGC
TCAAGGAAAGGTTGCATGAGAGGCAAAGGAGGCCCTGAGAATGCTCTTTG
TACTTACAAAGGTGTTCGACAGAGAACTTGGGGCAAATGGGTGGCCGAAA
TCCGTGAACCGAATCGCGGTGCACGTCTCTGGCTTGGGACATTTGACACT
TCCCATGAAGCCGCCGTGGCTTATGATGCTGCTGCTCGTAAACTTTACGG
CCCAGATGCCAAACTCAATTTGCCAGAGCTTCCATCAGCTCAATCTCATC
ACTTGCCAGCTTCTTCAGCCAATTGTACCCAGCATGTTGCTCAAAGGCGA
AATCAACCGCAAATGATCCACAATTCAGGTATCACTTGTTCATCAAACAG
CCCGCTTCCCAGGAGTAGTAATAATGATGCAACACAAGTTTACAATTTCA
ATTACAACAACTCAGCCATGTCTTTTCCTGATAATGGGAGCTTTGGGTCT
CATGGGAAGTTGGCTGAAAATGAAGTCAAATTCAGTCTGAATGAACAGGA
GACGGATGGATTTTGGGAGAATTTGAACGTGAATTCGCCTGTATTTGATG
AATCAATATGGGCAGAAGCAGCAATGTCCGTTGATTATCCAGTTATGGGC
GAACAAGGACTTCTTAATGGCAACTTTGTTGATGCAAGTGGCTGTGGGTG
GGATATGTTGCCGACTCCGTGGTGCGTTTGAGTATCTGACTTGGTGATTG
TCCATTCCAAGT
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