CX047400

Overview
NameCX047400
Unique NameCX047400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: DRE1E_ORYSJ (Dehydration-responsive element-binding protein 1E OS=Oryza sativa subsp. japonica GN=DREB1E PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 2
Query:   50 MGGIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELP 334
            +GG G++      + A  ++   R K   E     YKGVR R  G+WV E+REP+   R+WLGTF+T+  AA A+D AA  L G  A LN  + P
Sbjct:   19 VGGDGDEDSYMTVSSAPPKRRAGRTKF-KETRHPVYKGVRSRNPGRWVCEVREPHGKQRIWLGTFETAEMAARAHDVAAMALRGRAACLNFADSP 112          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: DRE1E_ORYSI (Dehydration-responsive element-binding protein 1E OS=Oryza sativa subsp. indica GN=DREB1E PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 2
Query:   50 MGGIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELP 334
            +GG G++      + A  ++   R K   E     YKGVR R  G+WV E+REP+   R+WLGTF+T+  AA A+D AA  L G  A LN  + P
Sbjct:   19 VGGDGDEDSYMTVSSAPPKRRAGRTKF-KETRHPVYKGVRSRNPGRWVCEVREPHGKQRIWLGTFETAEMAARAHDVAAMALRGRAACLNFADSP 112          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: PZ02_LUPPO (Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.342e-11
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSA 340
            Y+G RQR WG WV+EIR      R+W GTF+++ +AA AYD AAR + G  A+ N P  P+A
Sbjct:    8 YRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRARTNFPYNPNA 69          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.342e-11
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP 325
            Y+GVR+R WGK+ AEIR+  R GAR+WLGTF+T+ +AA AYD AA  + G  A LN P
Sbjct:   14 YRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFP 71          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF20_ARATH (Ethylene-responsive transcription factor ERF020 OS=Arabidopsis thaliana GN=ERF020 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGP----DAKLNLPEL 331
            YKG+R+R WGKWV+EIR P    RLWLG+F T+  AAVA+D A   L+ P    D   N P L
Sbjct:   14 YKGIRRRKWGKWVSEIRVPGTRQRLWLGSFSTAEGAAVAHDVAFYCLHRPSSLDDESFNFPHL 76          
The following BLAST results are available for this feature:
BLAST of CX047400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
DRE1E_ORYSJ4.856e-1141.05Dehydration-responsive element-binding protein 1E ... [more]
DRE1E_ORYSI4.856e-1141.05Dehydration-responsive element-binding protein 1E ... [more]
PZ02_LUPPO6.342e-1150.00Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE... [more]
ERF95_ARATH6.342e-1158.62Ethylene-responsive transcription factor ERF095 OS... [more]
ERF20_ARATH8.284e-1152.38Ethylene-responsive transcription factor ERF020 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H12-O24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047400 ID=CX047400; Name=CX047400; organism=Citrus sinensis; type=EST; length=812bp
AAACGATCTTGTTTTCAGAGTCCTGTCTTAGGGAATGTCAAAAGCACTTA
TGGGTGGTATTGGAGAGAAAAAGCAGCTTAAGAAGCCTGCACAGGCTAGC
TCAAGGAAAGGTTGCATGAGAGGCAAAGGAGGCCCTGAGAATGCTCTTTG
TACTTACAAAGGTGTTCGACAGAGAACTTGGGGCAAATGGGTGGCCGAAA
TCCGTGAACCGAATCGCGGTGCACGTCTCTGGCTTGGGACATTTGACACT
TCCCATGAAGCCGCCGTGGCTTATGATGCTGCTGCTCGTAAACTTTACGG
CCCAGATGCCAAACTCAATTTGCCAGAGCTTCCATCAGCTCAATCTCATC
ACTTGCCAGCTTCTTCAGCCAATTGTACCCAGCATGTTGCTCAAAGGCGA
AATCAACCGCAAATGATCCACAATTCAGGTATCACTTGTTCATCAAACAG
CCCGCTTCCCAGGAGTAGTAATAATGATGCAACACAAGTTTACAATTTCA
ATTACAACAACTCAGCCATGTCTTTTCCTGATAATGGGAGCTTTGGGTCT
CATGGGAAGTTGGCTGAAAATGAAGTCAAATTCAGTCTGAATGAACAGGA
GACGGATGGATTTTGGGAGAATTTGAACGTGAATTCGCCTGTATTTGATG
AATCAATATGGGCAGAAGCAGCAATGTCCGTTGATTATCCAGTTATGGGC
GAACAAGGACTTCTTAATGGCAACTTTGTTGATGCAAGTGGCTGTGGGTG
GGATATGTTGCCGACTCCGTGGTGCGTTTGAGTATCTGACTTGGTGATTG
TCCATTCCAAGT
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