CX047400

Overview
NameCX047400
Unique NameCX047400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.472e-17
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 2
Query:   80 KKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQS 346
            +KP +   +K  +        A   ++GVRQR WGKW AEIR+P+R  R+WLGTFDT+ EAA+ YD AA +L GP+A+LN P  P  ++
Sbjct:   62 EKPMKKKRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPPPVTEN 150          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.535e-17
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 2
Query:   50 MGGIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP 325
            +G +  +K+ K  + +  R G    K         Y+G+RQR WGKW AEIR+P++G R+WLGTF T+ EAA AYD AA K+ G  AKLN P
Sbjct:   22 LGSVSSRKKRKPVSVSEERDGKRERKN-------LYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP 106          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQ 343
            ++GVRQR WG+W AEIR+P RG R+WLGT+DT  EAAV YD AA KL GPDA  N P   +A+
Sbjct:   98 FRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAE 160          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17
Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  134 PENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPE 328
            P  A   Y+GVRQR WGKWVAEIR+P   ARLWLGTFDT+ EAA+AYD  A KL G  A LN PE
Sbjct:  136 PYIATKLYRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFPE 200          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.735e-17
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPEL 331
            Y+GVRQR WGKWVAEIR P    RLWLGTFDT+ EAA+AYD AA KL G  A+LN P+L
Sbjct:   83 YRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPDL 141          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.735e-17
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSANCTQHVAQRRNQPQMIHN 424
            Y+GVRQR WGKW AEIR+P + AR+WLGTF+T+  AA+AYD AA K  G  AKLN PE     S+    SS    Q       +PQ I N
Sbjct:   90 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERVQLGSNSTYYSSNQIPQ------MEPQSIPN 173          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPEL 331
            Y+GVRQR WGKWVAEIR P    RLWLGTF+T+ EAA+AYD AA K+ G +A+LN P++
Sbjct:  111 YRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPDI 169          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.723e-16
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASS 367
            Y+G+R+R WGKWVAEIREPN+ +RLWLG++ T   AA AYD A   L GP A+LN P+L   +  HL A++
Sbjct:   31 YRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDLLLQEEDHLSAAT 101          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.723e-16
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSANCTQHVAQRRNQP 409
            Y+GVR+R WG++ AEIR+P +  R+WLGTFDT  EAA+AYD AAR L G  AK N P   S   +HLP++ +  T   A   NQP
Sbjct:   12 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSPLSLDLNHLPSAPSAAT---AAANNQP 93          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.723e-16
Identity = 42/73 (57.53%), Postives = 49/73 (67.12%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSAN 373
            Y+GVRQR WGKWVAEIR P    RLWLGTFDT+ EAA+AYD AA KL G  A+LN P+      ++   S  N
Sbjct:   93 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQFRHEDGYYGGGSCFN 165          
The following BLAST results are available for this feature:
BLAST of CX047400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
CRF1_ARATH3.472e-1747.19Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF71_ARATH4.535e-1746.74Ethylene-responsive transcription factor ERF071 OS... [more]
PTI6_SOLLC5.923e-1761.90Pathogenesis-related genes transcriptional activat... [more]
ERF54_ARATH5.923e-1766.15Ethylene-responsive transcription factor ERF054 OS... [more]
ERF58_ARATH7.735e-1769.49Ethylene-responsive transcription factor ERF058 OS... [more]
EF114_ARATH7.735e-1751.11Ethylene-responsive transcription factor ERF114 OS... [more]
ERF57_ARATH1.010e-1664.41Ethylene-responsive transcription factor ERF057 OS... [more]
RAP21_ARATH1.723e-1654.93Ethylene-responsive transcription factor RAP2-1 OS... [more]
ERF81_ARATH1.723e-1651.76Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF60_ARATH1.723e-1657.53Ethylene-responsive transcription factor ERF060 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H12-O24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047400 ID=CX047400; Name=CX047400; organism=Citrus sinensis; type=EST; length=812bp
AAACGATCTTGTTTTCAGAGTCCTGTCTTAGGGAATGTCAAAAGCACTTA
TGGGTGGTATTGGAGAGAAAAAGCAGCTTAAGAAGCCTGCACAGGCTAGC
TCAAGGAAAGGTTGCATGAGAGGCAAAGGAGGCCCTGAGAATGCTCTTTG
TACTTACAAAGGTGTTCGACAGAGAACTTGGGGCAAATGGGTGGCCGAAA
TCCGTGAACCGAATCGCGGTGCACGTCTCTGGCTTGGGACATTTGACACT
TCCCATGAAGCCGCCGTGGCTTATGATGCTGCTGCTCGTAAACTTTACGG
CCCAGATGCCAAACTCAATTTGCCAGAGCTTCCATCAGCTCAATCTCATC
ACTTGCCAGCTTCTTCAGCCAATTGTACCCAGCATGTTGCTCAAAGGCGA
AATCAACCGCAAATGATCCACAATTCAGGTATCACTTGTTCATCAAACAG
CCCGCTTCCCAGGAGTAGTAATAATGATGCAACACAAGTTTACAATTTCA
ATTACAACAACTCAGCCATGTCTTTTCCTGATAATGGGAGCTTTGGGTCT
CATGGGAAGTTGGCTGAAAATGAAGTCAAATTCAGTCTGAATGAACAGGA
GACGGATGGATTTTGGGAGAATTTGAACGTGAATTCGCCTGTATTTGATG
AATCAATATGGGCAGAAGCAGCAATGTCCGTTGATTATCCAGTTATGGGC
GAACAAGGACTTCTTAATGGCAACTTTGTTGATGCAAGTGGCTGTGGGTG
GGATATGTTGCCGACTCCGTGGTGCGTTTGAGTATCTGACTTGGTGATTG
TCCATTCCAAGT
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