CX047400

Overview
NameCX047400
Unique NameCX047400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.723e-16
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPAS 364
            Y+GVRQR WGKWVAEIR P    RLWLGTF+T+ +AA+AYD AA +L G  AKLN P L     + LP+S
Sbjct:   71 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLIHEDMNPLPSS 140          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.723e-16
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPE 328
            Y+GVRQR WGKW AEIR+P+R AR+WLGTFDT+  AA AYD AA +  G  AKLN PE
Sbjct:   77 YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPE 134          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.251e-16
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPE 328
            Y+GVRQR WGKW AEIR+P + AR+WLGTF+T+  AA+AYD AA K  G  AKLN PE
Sbjct:   92 YRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPE 149          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.839e-16
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSANCTQHVAQRRNQPQMIH 421
            Y+GVRQR WGKW AEIR+P++  R+WLGTF+T+  AA AYDAAA +  G  AKLN PE       ++   +     H  Q   QP + +
Sbjct:   61 YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPE-------NVGTQTIQRNSHFLQNSMQPSLTY 142          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.839e-16
Identity = 57/131 (43.51%), Postives = 66/131 (50.38%), Query Frame = 2
Query:   50 MGGIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSANCTQH--VAQRRNQPQMIHNSGIT 436
            M G G   +    A ASS      G    +     Y+GVRQR WGKW AEIR+P + AR+WLGTFD +  AA AYD AA +  G  AKLN PE         PAS+     H   AQR   P    NSG T
Sbjct:  154 MSGPGPTYEYTTTATASSETSSFSG----DQPRRRYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVR---PASTEAQPVHQTAAQR---PTQSRNSGST 274          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.014e-16
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  122 GKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPEL 331
            G G  +  L  YKG+R R WGKWVAEIREPN+ +R+WLG++ T   AA AYD A   L GP A+LN PEL
Sbjct:   17 GIGTRKRDLKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFPEL 86          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.548e-16
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPEL 331
            YKG+R R WGKWVAEIREPN+ +RLWLG++ T   AA AYD A   L GP A+LN PEL
Sbjct:   21 YKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFPEL 79          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.552e-16
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPEL 331
            YKG+R R WGKWVAEIREPN+ +R+WLG++ T   AA AYD A   L GP A+LN PEL
Sbjct:   30 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPEL 88          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.459e-15
Identity = 41/74 (55.41%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSANC 376
            Y+GVRQR WGKWVAEIR P    R+WLGTF+T+ +AA+AYD AA  L G  A LN P+L     H L + S  C
Sbjct:  232 YRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFPDL----KHQLKSGSLRC 301          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.459e-15
Identity = 44/90 (48.89%), Postives = 55/90 (61.11%), Query Frame = 2
Query:   98 SSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASS 367
            +S K    GKG P      Y+GVR+R WGKWV+EIREP    R+WLG+F+T   AA AYD AA    G +A+LN PEL S+      +SS
Sbjct:    9 NSDKAQNDGKGVPS----AYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELASSLPRPADSSS 94          
The following BLAST results are available for this feature:
BLAST of CX047400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
ERF56_ARATH1.723e-1660.00Ethylene-responsive transcription factor ERF056 OS... [more]
EF110_ARATH1.723e-1667.24Ethylene-responsive transcription factor ERF110 OS... [more]
EF115_ARATH2.251e-1665.52Ethylene-responsive transcription factor ERF115 OS... [more]
RAP26_ARATH3.839e-1646.07Ethylene-responsive transcription factor RAP2-6 OS... [more]
ABR1_ARATH3.839e-1643.51Ethylene-responsive transcription factor ABR1 OS=A... [more]
ERF08_ARATH5.014e-1657.14Ethylene-responsive transcription factor ERF008 OS... [more]
ERF10_ARATH6.548e-1664.41Ethylene-responsive transcription factor ERF010 OS... [more]
RA210_ARATH8.552e-1662.71Ethylene-responsive transcription factor RAP2-10 O... [more]
ERF62_ARATH1.459e-1555.41Ethylene-responsive transcription factor ERF062 OS... [more]
ERF21_ARATH1.459e-1548.89Ethylene-responsive transcription factor ERF021 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H12-O24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047400 ID=CX047400; Name=CX047400; organism=Citrus sinensis; type=EST; length=812bp
AAACGATCTTGTTTTCAGAGTCCTGTCTTAGGGAATGTCAAAAGCACTTA
TGGGTGGTATTGGAGAGAAAAAGCAGCTTAAGAAGCCTGCACAGGCTAGC
TCAAGGAAAGGTTGCATGAGAGGCAAAGGAGGCCCTGAGAATGCTCTTTG
TACTTACAAAGGTGTTCGACAGAGAACTTGGGGCAAATGGGTGGCCGAAA
TCCGTGAACCGAATCGCGGTGCACGTCTCTGGCTTGGGACATTTGACACT
TCCCATGAAGCCGCCGTGGCTTATGATGCTGCTGCTCGTAAACTTTACGG
CCCAGATGCCAAACTCAATTTGCCAGAGCTTCCATCAGCTCAATCTCATC
ACTTGCCAGCTTCTTCAGCCAATTGTACCCAGCATGTTGCTCAAAGGCGA
AATCAACCGCAAATGATCCACAATTCAGGTATCACTTGTTCATCAAACAG
CCCGCTTCCCAGGAGTAGTAATAATGATGCAACACAAGTTTACAATTTCA
ATTACAACAACTCAGCCATGTCTTTTCCTGATAATGGGAGCTTTGGGTCT
CATGGGAAGTTGGCTGAAAATGAAGTCAAATTCAGTCTGAATGAACAGGA
GACGGATGGATTTTGGGAGAATTTGAACGTGAATTCGCCTGTATTTGATG
AATCAATATGGGCAGAAGCAGCAATGTCCGTTGATTATCCAGTTATGGGC
GAACAAGGACTTCTTAATGGCAACTTTGTTGATGCAAGTGGCTGTGGGTG
GGATATGTTGCCGACTCCGTGGTGCGTTTGAGTATCTGACTTGGTGATTG
TCCATTCCAAGT
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