CX047400

Overview
NameCX047400
Unique NameCX047400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.905e-15
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQS 346
            Y+GVR+R WG++ AEIR+P + +R+WLGTFDT+ EAA AYD AAR+  GP AK N P     QS
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSPTENQS 90          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.905e-15
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPS 337
            Y+GVR+R WG++ AEIR+P + +R+WLGTFDT+ EAA AYD AAR+  GP AK N P LPS
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP-LPS 86          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.488e-15
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  131 GPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQ 343
            G +     YKG+R+R WG+W AEIR+P +G R+WLGTF+T+ EAA AYD  A+++ G  AKLN P   S +
Sbjct:   17 GKKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGK 87          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.488e-15
Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSA 370
            +KG+R R WGKWVAEIREPN+ +RLWLG++ T   AA AYD A   L GP A LN PEL       LP +SA
Sbjct:   21 FKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPEL-------LPCTSA 85          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF22_ARATH (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.250e-15
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  152 TYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPEL-------PSAQSHHLPASSANCT-QHVAQRRNQPQMIHNSGIT 436
            +Y+G+R+R WGKWV+EIREP +  R+WLG+++T+  AA AYDAAA  L G    LN PEL        S+ S H+ A++ +        R ++P +    G++
Sbjct:   19 SYRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPELVDSFPRPESSSSEHIQAAAQDAALMFKPGRLSEPALESGQGLS 121          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.250e-15
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQ 343
            Y+GVRQR WGKW AEIR+P +  R+WLGTF T+ EAA+ YD AA KL GPDA  N    P  +
Sbjct:  117 YRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPE 179          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.244e-15
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPE 328
            YKG+R R WGKWVAEIREPN+ +R+WLG++ T+  AA AYD A   L GP A+LN PE
Sbjct:   36 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPE 93          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.244e-15
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSA 370
            Y+GVR RTWGKWV+EIREP + +R+WLGTF T   AA A+DAAA  + G  A LN PEL +      PASS+
Sbjct:   43 YRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELATYLPR--PASSS 112          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.543e-15
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 2
Query:  122 GKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSH 349
            G GG +     ++GVR+R WG++ AEIR+P +  R+WLGTFD++ +AA AYDAAAR L GP AK N P LP A  H
Sbjct:   19 GSGGSKEI--RFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFP-LPYAHHH 91          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.240e-15
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 2
Query:   80 KKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPEL 331
            K PA  +S     R KG        Y+GVR+R WGK+ AEIR+P + GAR+WLGT++T  +AAVAYD AA +L G  AKLN P L
Sbjct:   73 KPPATKASGSHAPRQKG------MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHL 151          
The following BLAST results are available for this feature:
BLAST of CX047400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
ERF4_TOBAC1.905e-1557.81Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY1.905e-1562.30Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF73_ARATH2.488e-1550.70Ethylene-responsive transcription factor ERF073 OS... [more]
ERF11_ARATH2.488e-1556.94Ethylene-responsive transcription factor ERF011 OS... [more]
ERF22_ARATH3.250e-1539.81Ethylene-responsive transcription factor ERF022 OS... [more]
CRF4_ARATH3.250e-1558.73Ethylene-responsive transcription factor CRF4 OS=A... [more]
RAP29_ARATH4.244e-1562.07Ethylene-responsive transcription factor RAP2-9 OS... [more]
ERF37_ARATH4.244e-1556.94Ethylene-responsive transcription factor ERF037 OS... [more]
ERF3_TOBAC5.543e-1553.95Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF99_ARATH7.240e-1551.76Ethylene-responsive transcription factor 13 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H12-O24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047400 ID=CX047400; Name=CX047400; organism=Citrus sinensis; type=EST; length=812bp
AAACGATCTTGTTTTCAGAGTCCTGTCTTAGGGAATGTCAAAAGCACTTA
TGGGTGGTATTGGAGAGAAAAAGCAGCTTAAGAAGCCTGCACAGGCTAGC
TCAAGGAAAGGTTGCATGAGAGGCAAAGGAGGCCCTGAGAATGCTCTTTG
TACTTACAAAGGTGTTCGACAGAGAACTTGGGGCAAATGGGTGGCCGAAA
TCCGTGAACCGAATCGCGGTGCACGTCTCTGGCTTGGGACATTTGACACT
TCCCATGAAGCCGCCGTGGCTTATGATGCTGCTGCTCGTAAACTTTACGG
CCCAGATGCCAAACTCAATTTGCCAGAGCTTCCATCAGCTCAATCTCATC
ACTTGCCAGCTTCTTCAGCCAATTGTACCCAGCATGTTGCTCAAAGGCGA
AATCAACCGCAAATGATCCACAATTCAGGTATCACTTGTTCATCAAACAG
CCCGCTTCCCAGGAGTAGTAATAATGATGCAACACAAGTTTACAATTTCA
ATTACAACAACTCAGCCATGTCTTTTCCTGATAATGGGAGCTTTGGGTCT
CATGGGAAGTTGGCTGAAAATGAAGTCAAATTCAGTCTGAATGAACAGGA
GACGGATGGATTTTGGGAGAATTTGAACGTGAATTCGCCTGTATTTGATG
AATCAATATGGGCAGAAGCAGCAATGTCCGTTGATTATCCAGTTATGGGC
GAACAAGGACTTCTTAATGGCAACTTTGTTGATGCAAGTGGCTGTGGGTG
GGATATGTTGCCGACTCCGTGGTGCGTTTGAGTATCTGACTTGGTGATTG
TCCATTCCAAGT
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