CX047400

Overview
NameCX047400
Unique NameCX047400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.240e-15
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPEL 331
            Y+GVRQR WGKWVAEIR P    R+WLGT+DT+  AA AYD AA KL G  A+LN P L
Sbjct:  136 YRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNL 194          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.240e-15
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHL 355
            YKGVR R+WG WV+EIR PN+  R+WLG++ T+  AA AYD A   L GP A LN P   S+ SHHL
Sbjct:   50 YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFP--TSSSSHHL 114          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.456e-15
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   68 KKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASS 367
            +++    A+ +   G +R +   +N    Y+GVRQR WGK+ AEIR+P R  R+WLGTF+T+ +AA AYD AA    GP AKLN P +    S   P ++
Sbjct:  110 RRESSPVAKKAEGGGKIRKRKNKKNG---YRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAA 206          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.456e-15
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQ 343
            ++GVRQR WGKW AEIR+P +  R+WLGTF+T+ EAAV YD AA +L GPDA  N    P  +
Sbjct:  125 FRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSIPPQEE 187          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.613e-14
Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSAN----CTQHVAQRRNQPQMIH 421
            Y+GVR+R WG++ AEIR+P + +R+WLGTFD++ +AA AYD AAR L GP AK N P   S  S   P +  +    C+  V Q +  P M H
Sbjct:   27 YRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPIDCSPSSPLQPLTYLHNQNLCSPPVIQNQIDPFMDH 119          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.613e-14
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 2
Query:   80 KKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLP 358
            +K  ++S  K   +G     N    ++GVR R WGKWV+EIREP + +R+WLGTF T   AA A+D AA  + G  A LN PEL    ++HLP
Sbjct:   19 EKTGKSSKTKNEQKGVSKQPN----FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPEL----AYHLP 103          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.613e-14
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 2
Query:   89 AQASSRKGCMRGKGGPENALCT-----YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPE 328
            A AS+ K C  G GG E +  T     Y GVR+R WGKWV+EIREP + +R+WLG+F     AA AYD AA  L G  A+LN PE
Sbjct:   20 ATASAVKSC--GGGGKETSSSTTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPE 102          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.613e-14
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 2
Query:   53 GGIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPS 337
            G +  KK+ K+  ++ S    +            ++GVRQR WGKW AEIR+P +  RLWLGT++T+ EAA+ YD AA +L GPDA  N    P+
Sbjct:   88 GQMESKKRQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTPT 182          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.106e-14
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSANCTQHVAQRRNQ--PQMIH 421
            ++GVR+R WG++ AEIR+P + AR+WLGTFD++ EAA AYD+AAR L GP AK N P      S   P  +    Q   Q +NQ  P M H
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFP----IDSSSPPPPNLRFNQIRNQNQNQVDPFMDH 114          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.106e-14
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 2
Query:   86 PAQASSRKGCMRGKGGPENALCT-------YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP 325
            P QA+ R   +   GG +    T       ++GVR+R WG++ AEIR+P +  R+WLGTFDT+ EAA AYD AAR+  G  AK N P
Sbjct:    3 PRQANGRSIAVSEGGGGKTMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89          
The following BLAST results are available for this feature:
BLAST of CX047400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
ERF61_ARATH7.240e-1564.41Ethylene-responsive transcription factor ERF061 OS... [more]
ERF12_ARATH7.240e-1556.72Ethylene-responsive transcription factor ERF012 OS... [more]
EF109_ARATH9.456e-1542.00Ethylene-responsive transcription factor ERF109 OS... [more]
CRF3_ARATH9.456e-1557.14Ethylene-responsive transcription factor CRF3 OS=A... [more]
ERF83_ARATH1.613e-1446.24Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF39_ARATH1.613e-1445.16Ethylene-responsive transcription factor ERF039 OS... [more]
ERF23_ARATH1.613e-1451.76Ethylene-responsive transcription factor ERF023 OS... [more]
CRF2_ARATH1.613e-1442.11Ethylene-responsive transcription factor CRF2 OS=A... [more]
ERF82_ARATH2.106e-1448.35Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF80_ARATH2.106e-1445.98Ethylene-responsive transcription factor 9 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H12-O24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047400 ID=CX047400; Name=CX047400; organism=Citrus sinensis; type=EST; length=812bp
AAACGATCTTGTTTTCAGAGTCCTGTCTTAGGGAATGTCAAAAGCACTTA
TGGGTGGTATTGGAGAGAAAAAGCAGCTTAAGAAGCCTGCACAGGCTAGC
TCAAGGAAAGGTTGCATGAGAGGCAAAGGAGGCCCTGAGAATGCTCTTTG
TACTTACAAAGGTGTTCGACAGAGAACTTGGGGCAAATGGGTGGCCGAAA
TCCGTGAACCGAATCGCGGTGCACGTCTCTGGCTTGGGACATTTGACACT
TCCCATGAAGCCGCCGTGGCTTATGATGCTGCTGCTCGTAAACTTTACGG
CCCAGATGCCAAACTCAATTTGCCAGAGCTTCCATCAGCTCAATCTCATC
ACTTGCCAGCTTCTTCAGCCAATTGTACCCAGCATGTTGCTCAAAGGCGA
AATCAACCGCAAATGATCCACAATTCAGGTATCACTTGTTCATCAAACAG
CCCGCTTCCCAGGAGTAGTAATAATGATGCAACACAAGTTTACAATTTCA
ATTACAACAACTCAGCCATGTCTTTTCCTGATAATGGGAGCTTTGGGTCT
CATGGGAAGTTGGCTGAAAATGAAGTCAAATTCAGTCTGAATGAACAGGA
GACGGATGGATTTTGGGAGAATTTGAACGTGAATTCGCCTGTATTTGATG
AATCAATATGGGCAGAAGCAGCAATGTCCGTTGATTATCCAGTTATGGGC
GAACAAGGACTTCTTAATGGCAACTTTGTTGATGCAAGTGGCTGTGGGTG
GGATATGTTGCCGACTCCGTGGTGCGTTTGAGTATCTGACTTGGTGATTG
TCCATTCCAAGT
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