CX047400

Overview
NameCX047400
Unique NameCX047400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.106e-14
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSA 370
            ++GVRQR WG WV+EIR P    R+WLGTF+T+ +AA AYD AAR + GP A+ N P  P+A    +P SS+
Sbjct:    8 FRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNA----IPTSSS 75          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.751e-14
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP 325
            Y+GVRQR WGK+ AEIR+PNR G R+WLGTFDT+ EAA AYD AA KL G  A +N P
Sbjct:  138 YRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFP 195          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.751e-14
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLP 358
            ++GVR R WGKWV+EIREP + +R+WLGTF T+  AA A+D AA  + G  A LN PEL    ++HLP
Sbjct:   45 FRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPEL----AYHLP 108          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.593e-14
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSA 370
            Y+GVR+R WG++ AEIR+P +  R+WLGTFDT+ EAA AYD AAR   G  AK N P         +P   A
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTFLELSDQKVPTGFA 96          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.593e-14
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP 325
            Y+GVRQR WGK+ AEIR+PNR G R+WLGTFDT+ EAA AYD AA KL G  A +N P
Sbjct:  145 YRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFP 202          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.593e-14
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPN-RGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP 325
            Y+GVRQR WGK+ AEIR+PN RG+R+WLGTFDT+ EAA AYD AA +L G  A LN P
Sbjct:  156 YRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFP 213          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.593e-14
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 2
Query:   83 KPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPAS 364
            K     S K   RG+   ++ +  Y+GVR R WGKWV+EIREP + +R+WLGTF T   AA A+D AA  + G  A LN PEL  A S   P S
Sbjct:   29 KSKAEQSEKKTKRGRDSGKHPV--YRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFPEL--ADSFPRPVS 118          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana GN=ERF013 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.693e-14
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 2
Query:  137 ENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPEL 331
            +N +  YKGVR R+WG WV EIR PN+  R+WLG++ T+  AA AYDAA   L GP A LN P +
Sbjct:   37 KNKIKKYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNI 101          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.129e-14
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 2
Query:  125 KGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSANCTQHVAQRRNQPQ 412
            +G   +    YKGVR+R WGKWV+EIR PN   R+WLG++DT  +AA A+DAA   L G +AK N P+ P   S     S +   +  A+  N  +
Sbjct:    2 EGSSSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNPPVISGGRNLSRSEIREAAARFANSAE 97          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.005e-14
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSA 370
            Y+GVR R+WGKWV+EIR+P +  R+WLGTF T+  AA A+D AA  + G  A LN PEL S      PASS+
Sbjct:   79 YRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPELASLFPR--PASSS 148          
The following BLAST results are available for this feature:
BLAST of CX047400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
ERF03_ARATH2.106e-1452.78Ethylene-responsive transcription factor ERF003 OS... [more]
ERF5_NICSY2.751e-1467.24Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF38_ARATH2.751e-1454.41Ethylene-responsive transcription factor ERF038 OS... [more]
ERF78_ARATH3.593e-1450.00Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF5_TOBAC3.593e-1467.24Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF102_ARATH3.593e-1467.24Ethylene-responsive transcription factor 5 OS=Arab... [more]
DREB3_ARATH3.593e-1446.81Dehydration-responsive element-binding protein 3 O... [more]
ERF13_ARATH4.693e-1453.85Ethylene-responsive transcription factor ERF013 OS... [more]
ERF17_ARATH6.129e-1441.67Ethylene-responsive transcription factor ERF017 OS... [more]
ERF36_ARATH8.005e-1454.17Ethylene-responsive transcription factor ERF036 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H12-O24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047400 ID=CX047400; Name=CX047400; organism=Citrus sinensis; type=EST; length=812bp
AAACGATCTTGTTTTCAGAGTCCTGTCTTAGGGAATGTCAAAAGCACTTA
TGGGTGGTATTGGAGAGAAAAAGCAGCTTAAGAAGCCTGCACAGGCTAGC
TCAAGGAAAGGTTGCATGAGAGGCAAAGGAGGCCCTGAGAATGCTCTTTG
TACTTACAAAGGTGTTCGACAGAGAACTTGGGGCAAATGGGTGGCCGAAA
TCCGTGAACCGAATCGCGGTGCACGTCTCTGGCTTGGGACATTTGACACT
TCCCATGAAGCCGCCGTGGCTTATGATGCTGCTGCTCGTAAACTTTACGG
CCCAGATGCCAAACTCAATTTGCCAGAGCTTCCATCAGCTCAATCTCATC
ACTTGCCAGCTTCTTCAGCCAATTGTACCCAGCATGTTGCTCAAAGGCGA
AATCAACCGCAAATGATCCACAATTCAGGTATCACTTGTTCATCAAACAG
CCCGCTTCCCAGGAGTAGTAATAATGATGCAACACAAGTTTACAATTTCA
ATTACAACAACTCAGCCATGTCTTTTCCTGATAATGGGAGCTTTGGGTCT
CATGGGAAGTTGGCTGAAAATGAAGTCAAATTCAGTCTGAATGAACAGGA
GACGGATGGATTTTGGGAGAATTTGAACGTGAATTCGCCTGTATTTGATG
AATCAATATGGGCAGAAGCAGCAATGTCCGTTGATTATCCAGTTATGGGC
GAACAAGGACTTCTTAATGGCAACTTTGTTGATGCAAGTGGCTGTGGGTG
GGATATGTTGCCGACTCCGTGGTGCGTTTGAGTATCTGACTTGGTGATTG
TCCATTCCAAGT
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