CX047400

Overview
NameCX047400
Unique NameCX047400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.005e-14
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSANCTQHVAQRRNQPQMIHNS 427
            Y+GVR+R WGK+ AEIR+P + GAR+WLGT++T  EAA+AYD AA ++ G  A LN P       H +  +     +  A+RR  P+   +S
Sbjct:  105 YRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFP-------HRIGLNEPEPVRVTAKRRASPEPASSS 189          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.045e-13
Identity = 63/230 (27.39%), Postives = 97/230 (42.17%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNL--PELPSAQSHHLPASSANCTQHVAQRRNQPQMIHNSGITCXXXXXXXXXXXXDATQVYNFNYNNSAMSFPDNGSFGSHGKLAENEVKFSLN--EQETDGFWENLNVNSPVFD---------------------ESIWAEAAMSVDYPVMGEQGLLNGNFVDASGC-GWDMLPT 766
            Y GVR+R WG++ AEIR P    R WLGTFDT+ EAA+AYD AAR + G  A+ N    ++P   S     S     + +++  N P  +                      +  N N NN      +N  + S     +N ++FS N   QE +  ++++  N+   D                     +S W  A  S+D       G ++ N +  SG  G++ LP+
Sbjct:   39 YVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVYSDMPRGSSVTSFVSPDESQRFISELFNPPSQL----------------------EATNSNNNN------NNNLYSSTNNQNQNSIEFSYNGWPQEAECGYQSITSNAEHCDHELPPLPPSTCFGAELRIPETDSYWNVAHASIDTFAFELDGFVDQNSLGQSGTEGFNSLPS 240          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.045e-13
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  152 TYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPEL 331
            TY+GVR R+WGKWV+EIREP + +R+WLGT+ T+  AA A+D AA  + G  A LN P+L
Sbjct:   99 TYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKL 158          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF16_ARATH (Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.045e-13
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELP 334
            Y GVR+R WGKWVAEIR PN   R+WLG+FD++ +AA A+DAA   L GP A+ N P+ P
Sbjct:    7 YTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDNP 66          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.365e-13
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSA 370
            ++GVRQR WG WV+EIR P    R+WLGTFDT+  AA AYD AA  + G  AK N P + S  S+ L  +SA
Sbjct:    7 FRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPVIKSNGSNSLEINSA 78          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.365e-13
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPEL 331
            Y+GVR R+WGKWV+EIREP + +R+WLGTF T+  A  A+D AA  + G  A LN PEL
Sbjct:   19 YRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFPEL 77          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.365e-13
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPEL 331
            Y+G R R+WGKWV+EIREP + +R+WLGTF T+  AA A+D AA  + G  A LN PEL
Sbjct:   26 YRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPEL 84          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.365e-13
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  137 ENALCTYKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP 325
            EN    Y+GVR+R WGK+ AEIR+PN+ G R+WLGTFDT+ EAA  YD AA KL G  A LN P
Sbjct:   66 ENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFP 129          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.365e-13
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 2
Query:   83 KPAQASSRKG---CMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLN-LPELPSAQSHHLP 358
            KPA+ + +K         G    ++  Y+GVRQR WGK+ AEIR+P+   RLWLGTF T+ EAA+ YD AA ++ G +A+ N L   PS  +  LP
Sbjct:   72 KPARKAKKKSPAAAAENGGDLVKSVVKYRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTPPPSPTTEVLP 167          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.042e-13
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  122 GKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLN-LPELPSAQSHH 352
            G G    +   Y+GVR+R WG++ AEIR+P    R WLGTFDT+ EAA AYD AAR + G  A+ N +  +PS  S+H
Sbjct:   47 GAGASGVSTIRYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPMPSLDSYH 124          
The following BLAST results are available for this feature:
BLAST of CX047400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
ERF1_TOBAC8.005e-1443.48Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF87_ARATH1.045e-1327.39Ethylene-responsive transcription factor ERF087 OS... [more]
ERF34_ARATH1.045e-1356.67Ethylene-responsive transcription factor ERF034 OS... [more]
ERF16_ARATH1.045e-1358.33Ethylene-responsive transcription factor ERF016 OS... [more]
SHN3_ARATH1.365e-1352.78Ethylene-responsive transcription factor SHINE 3 O... [more]
ERF43_ARATH1.365e-1357.63Ethylene-responsive transcription factor ERF043 OS... [more]
ERF42_ARATH1.365e-1357.63Ethylene-responsive transcription factor ERF042 OS... [more]
EF105_ARATH1.365e-1360.94Ethylene-responsive transcription factor ERF105 OS... [more]
CRF5_ARATH1.365e-1343.75Ethylene-responsive transcription factor CRF5 OS=A... [more]
ESR2_ARATH3.042e-1348.72Ethylene-responsive transcription factor ESR2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H12-O24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047400 ID=CX047400; Name=CX047400; organism=Citrus sinensis; type=EST; length=812bp
AAACGATCTTGTTTTCAGAGTCCTGTCTTAGGGAATGTCAAAAGCACTTA
TGGGTGGTATTGGAGAGAAAAAGCAGCTTAAGAAGCCTGCACAGGCTAGC
TCAAGGAAAGGTTGCATGAGAGGCAAAGGAGGCCCTGAGAATGCTCTTTG
TACTTACAAAGGTGTTCGACAGAGAACTTGGGGCAAATGGGTGGCCGAAA
TCCGTGAACCGAATCGCGGTGCACGTCTCTGGCTTGGGACATTTGACACT
TCCCATGAAGCCGCCGTGGCTTATGATGCTGCTGCTCGTAAACTTTACGG
CCCAGATGCCAAACTCAATTTGCCAGAGCTTCCATCAGCTCAATCTCATC
ACTTGCCAGCTTCTTCAGCCAATTGTACCCAGCATGTTGCTCAAAGGCGA
AATCAACCGCAAATGATCCACAATTCAGGTATCACTTGTTCATCAAACAG
CCCGCTTCCCAGGAGTAGTAATAATGATGCAACACAAGTTTACAATTTCA
ATTACAACAACTCAGCCATGTCTTTTCCTGATAATGGGAGCTTTGGGTCT
CATGGGAAGTTGGCTGAAAATGAAGTCAAATTCAGTCTGAATGAACAGGA
GACGGATGGATTTTGGGAGAATTTGAACGTGAATTCGCCTGTATTTGATG
AATCAATATGGGCAGAAGCAGCAATGTCCGTTGATTATCCAGTTATGGGC
GAACAAGGACTTCTTAATGGCAACTTTGTTGATGCAAGTGGCTGTGGGTG
GGATATGTTGCCGACTCCGTGGTGCGTTTGAGTATCTGACTTGGTGATTG
TCCATTCCAAGT
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