CX047400

Overview
NameCX047400
Unique NameCX047400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.850e-13
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPS 337
            Y+GVRQR WGK+ AEIR+P+   R+WLGTF T+ EAA+AYD AA  L GP A  N    P+
Sbjct:  105 YRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPPT 165          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.510e-12
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP 325
            ++GVRQR WG WVAEIR P    R+WLGTF+T+ EAA AYD AA  + G +AK N P
Sbjct:    7 FRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFP 63          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.510e-12
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP 325
            Y+GVR+R WGK+ AEIR+  R GAR+WLGTF+T+ EAA+AYD AA ++ G  A LN P
Sbjct:   59 YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.510e-12
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLN 319
            Y+GVR+R WG++ AEIR+P +  R+WLGTFDT+ +AA AYDAAAR   G  AK N
Sbjct:   31 YRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTN 85          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.972e-12
Identity = 57/188 (30.32%), Postives = 82/188 (43.62%), Query Frame = 2
Query:  131 GPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLN--------LPELPSAQSHHLPASSANC----------TQH-----VAQRRNQPQMIHNSGITCXXXXXXXXXXXXDATQVYNFNYNNSAMSFPDNGSFGSHGKLAENEVKFSLNEQETDGFWENL 625
            G  ++   Y+GVR+R WG++ AEIR+P    R WLGTFDT+ +AA AYD+AAR   G  A+ N        +PE   + S+   + SA C          TQ+      AQR    Q I     +C              T  YN ++N S+ S+  + +        EN   F   E    G  + +
Sbjct:   49 GAGSSTTRYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYPTAVIMPEPRFSFSNKKSSPSARCPLPSLPLDSSTQNFYGAPAAQRIYNTQSIFLRDASCSSR----------KTTPYNNSFNGSSSSYSASKTACVSYSENENNESFFPEESSDTGLLQEV 226          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF70_ARATH (Ethylene-responsive transcription factor ERF070 OS=Arabidopsis thaliana GN=ERF070 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.972e-12
Identity = 39/61 (63.93%), Postives = 44/61 (72.13%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNRGA------RLWLGTFDTSHEAAVAYDAAARKLYGPDAKLN 319
            Y+GVRQR WGKWVAEIR   RGA      RLWLGTF+T+ EAA+AYD A+ KL GP A  N
Sbjct:   79 YRGVRQRPWGKWVAEIR-CGRGACKGRRDRLWLGTFNTAEEAALAYDNASIKLIGPHAPTN 138          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.972e-12
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLP 325
            Y+GVR+R WGK+ AEIR+PN+ G R+WLGT+DT+ EA  AYD AA +L G  A LN P
Sbjct:   88 YRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFP 145          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF86_ARATH (Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.575e-12
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 2
Query:  110 GCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPS 337
            G  RG+   +     + GVR+R WG++ AEIR+P    R WLGTFDT+HEAA+AYD AA  + G  A+ N    P+
Sbjct:   21 GERRGRRSKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQARTNFVYTPT 96          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: ERF84_ARATH (Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana GN=ERF084 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.575e-12
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  110 GCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLN 319
            G  RG+  P+     + GVR+R WG+W AEIR+     R WLGTFDT+ EAA AYDAAAR+L G  AK N
Sbjct:  102 GVKRGRKMPQKT-GGFMGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGTKAKTN 170          
BLAST of CX047400 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.363e-12
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  155 YKGVRQRTWGKWVAEIREP-NRGARLWLGTFDTSHEAAVAYDAAARKLYGPDAKLNLPELPSAQSHHLPASS 367
            Y+GVR+R WGK+ AEIR+P  +G+R+WLGTF++  +AA AYD AA KL G  A LN P    A  +  PA+S
Sbjct:  110 YRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFP--LDAGKYEAPANS 179          
The following BLAST results are available for this feature:
BLAST of CX047400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
CRF6_ARATH8.850e-1357.38Ethylene-responsive transcription factor CRF6 OS=A... [more]
WIN1_ARATH1.510e-1259.65Ethylene-responsive transcription factor WIN1 OS=A... [more]
PTI5_SOLLC1.510e-1260.34Pathogenesis-related genes transcriptional activat... [more]
ERF79_ARATH1.510e-1260.00Ethylene-responsive transcription factor 8 OS=Arab... [more]
ESR1_ARATH1.972e-1230.32Ethylene-responsive transcription factor ESR1 OS=A... [more]
ERF70_ARATH1.972e-1263.93Ethylene-responsive transcription factor ERF070 OS... [more]
EF104_ARATH1.972e-1260.34Ethylene-responsive transcription factor ERF104 OS... [more]
ERF86_ARATH2.575e-1246.05Ethylene-responsive transcription factor ERF086 OS... [more]
ERF84_ARATH2.575e-1254.29Ethylene-responsive transcription factor ERF084 OS... [more]
EF106_ARATH3.363e-1252.78Ethylene-responsive transcription factor ERF106 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H12-O24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047400 ID=CX047400; Name=CX047400; organism=Citrus sinensis; type=EST; length=812bp
AAACGATCTTGTTTTCAGAGTCCTGTCTTAGGGAATGTCAAAAGCACTTA
TGGGTGGTATTGGAGAGAAAAAGCAGCTTAAGAAGCCTGCACAGGCTAGC
TCAAGGAAAGGTTGCATGAGAGGCAAAGGAGGCCCTGAGAATGCTCTTTG
TACTTACAAAGGTGTTCGACAGAGAACTTGGGGCAAATGGGTGGCCGAAA
TCCGTGAACCGAATCGCGGTGCACGTCTCTGGCTTGGGACATTTGACACT
TCCCATGAAGCCGCCGTGGCTTATGATGCTGCTGCTCGTAAACTTTACGG
CCCAGATGCCAAACTCAATTTGCCAGAGCTTCCATCAGCTCAATCTCATC
ACTTGCCAGCTTCTTCAGCCAATTGTACCCAGCATGTTGCTCAAAGGCGA
AATCAACCGCAAATGATCCACAATTCAGGTATCACTTGTTCATCAAACAG
CCCGCTTCCCAGGAGTAGTAATAATGATGCAACACAAGTTTACAATTTCA
ATTACAACAACTCAGCCATGTCTTTTCCTGATAATGGGAGCTTTGGGTCT
CATGGGAAGTTGGCTGAAAATGAAGTCAAATTCAGTCTGAATGAACAGGA
GACGGATGGATTTTGGGAGAATTTGAACGTGAATTCGCCTGTATTTGATG
AATCAATATGGGCAGAAGCAGCAATGTCCGTTGATTATCCAGTTATGGGC
GAACAAGGACTTCTTAATGGCAACTTTGTTGATGCAAGTGGCTGTGGGTG
GGATATGTTGCCGACTCCGTGGTGCGTTTGAGTATCTGACTTGGTGATTG
TCCATTCCAAGT
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