CX047395

Overview
NameCX047395
Unique NameCX047395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_DROME (Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 46/108 (42.59%), Postives = 70/108 (64.81%), Query Frame = -3
Query:  378 AGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXKQPHYN-QDKTPEFIIKLLQFLVPLLI 698
            A HN  KD WL+I   +YDVT FL++HPGG+EVL+   GKDAT++FEDVGHS+ A+ MM ++ +G++  S            +P ++ + +T E  +K   +LVPL++
Sbjct:   15 AKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVGHSNDARDMMKKYKIGELVES---ERTSVAQKSEPTWSTEQQTEESSVK--SWLVPLVL 117          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5B_MOUSE (Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = -3
Query:  489 AGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 698
            A  N  ++ W++I G+VYD+T+FL +HPGG+EVLL   G DAT+ FEDVGHS  A+ M+ ++Y+GD+  S
Sbjct:   29 AKRNSAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPS 98          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5B_RAT (Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 35/67 (52.24%), Postives = 51/67 (76.12%), Query Frame = -3
Query:  498 AGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 698
            A  N  ++ W++I G+VYD+T+FL +HPGG+EVLL   G DAT+ FEDVGHS  A+ M+ ++Y+GD+
Sbjct:   29 AKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDV 95          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_RHIST (Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 33/69 (47.83%), Postives = 52/69 (75.36%), Query Frame = -3
Query:  486 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 692
            H  + D W++I  KVYD+T+F+ +HPGG+EVL+   GKDAT+ FED+GHS  A+ M++E+ +G +D ++
Sbjct:   14 HKTKSDLWVVIHNKVYDITRFVVEHPGGEEVLVDEGGKDATEAFEDIGHSDEAREMLEEYLIGSLDEAS 82          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_CHICK (Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 33/65 (50.77%), Postives = 51/65 (78.46%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            HN+ +  W+I+  ++YD+TKFLD+HPGG+EVL    G DAT++FEDVGHS+ A+A+ + F +G++
Sbjct:   25 HNNSQSTWIIVHHRIYDITKFLDEHPGGEEVLREQAGGDATENFEDVGHSTDARALSETFIIGEL 89          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB52_SCHPO (Probable cytochrome b5 2 OS=Schizosaccharomyces pombe GN=SPCC16A11.10c PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 33/65 (50.77%), Postives = 52/65 (80.00%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            HN R D +++++ KVYD++KFLD HPGG+EVL+   G+DA+  FEDVGHS  A+ ++++FY+G++
Sbjct:   14 HNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEKFYIGNL 78          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_MUSDO (Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = -3
Query:  369 AGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXKQPHYN-QDKTPEFIIKLLQFLVPLLILGL 698
            A +N +   W II   VYDVT FL++HPGG+EVL+   GKDAT+ FEDVGHSS A+ MM ++ VG++               +P +N + KT E  +K   +L+P  +LGL
Sbjct:   15 AKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGEL---VAEERSNVPEKSEPTWNTEQKTEESSMK--SWLMP-FVLGL 119          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_HUMAN (Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            HN  K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ M   F +G++
Sbjct:   20 HNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGEL 84          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_HORSE (Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            HN  K  WLI+  KVYD+TKFL+DHPGG+EVL    G DAT++FED+GHS+ A+ +   F +G++
Sbjct:   20 HNHSKSTWLILHHKVYDLTKFLEDHPGGEEVLREQAGGDATENFEDIGHSTDARELSKTFIIGEL 84          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_YEAST (Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = -3
Query:  486 AGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 698
            A HN  ++ W+II+ KVYDV++F D+HPGGDE+++   G+DAT+ F D+GHS  A  ++   Y+GD+D ++
Sbjct:   11 AEHNGPENFWIIIDDKVYDVSQFKDEHPGGDEIIMDLGGQDATESFVDIGHSDEALRLLKGLYIGDVDKTS 81          
The following BLAST results are available for this feature:
BLAST of CX047395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CYB5_DROME5.417e-1842.59Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5... [more]
CYB5B_MOUSE7.074e-1851.43Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1... [more]
CYB5B_RAT1.576e-1752.24Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b... [more]
CYB5_RHIST7.822e-1747.83Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1[more]
CYB5_CHICK1.742e-1650.77Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4[more]
CYB52_SCHPO2.276e-1650.77Probable cytochrome b5 2 OS=Schizosaccharomyces po... [more]
CYB5_MUSDO5.070e-1643.24Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV... [more]
CYB5_HUMAN5.070e-1655.38Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2[more]
CYB5_HORSE5.070e-1653.85Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3[more]
CYB5_YEAST6.621e-1646.48Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H08-O16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047395 ID=CX047395; Name=CX047395; organism=Citrus sinensis; type=EST; length=700bp
CTTGCACTTAATTAAGGAAATTTAAATAATGTAGGAGAAAGGAAGCCCAA
AGGCCATTTGGACAATTGGTGCTTTCCTTCCTTTCTTTTAGATGAAGATG
CATACGAATAAAAATGAAAGCAAAGCCAAAACGAGGAACTGCAAATTGAT
CATTGCATTCCAAGTCATGCGGGCAGTGAATGGTCACTTATCAAACACAA
GCACATGCCATCACAAAAGATAAAGAACCCTACATTTTCTGGTGATAATA
GTTCCAAACAACTAGTAAAAACAAGGTGCAATGCAACGGATATAGATTTA
TTGTAAATGTATTTTTATCTTGCAAGGTATCATTAAGCGGATTTGGTATA
GAAGCGGATGCCAACAGCCAATCCTAAGATTAGCAGAGGAACTAGGAACT
GGAGGAGCTTTATAATAAACTCGGGTGTCTTGTCTTGGTTGTAGTGAGGC
TGCTTGGGAGGGGTGTACTTGGTCTTGGTGGGAACGGTTGATGAATCAAT
GTCACCCACATAGAATTCATCCATCATCGCTTTTGCACTGCTACTGTGAC
CAACATCCTCAAAGTCATCAGTCGCATCCTTTCCTGTGGCAGACAACAAT
ACCTCGTCTCCACCAGGATGGTCATCCAAGAATTTTGTCACATCATATAC
CTTGCCCTCAATGATAAGCCAACAGTCCTTGCGGTCGTTGTGCCCAGCCT
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