CX047395

Overview
NameCX047395
Unique NameCX047395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_PIG (Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            HN+ K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   F +G++
Sbjct:   20 HNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_NEUCR (Probable cytochrome b5 OS=Neurospora crassa GN=B23L21.190 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 35/67 (52.24%), Postives = 50/67 (74.63%), Query Frame = -3
Query:  498 AGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 698
            A HN +KD +++I  KVYD+TKF+D+HPGG+EVLL   G+D+T+ FEDVGHS  A+  ++   VG +
Sbjct:   11 AEHNTKKDLYVVIHDKVYDITKFVDEHPGGEEVLLDVAGQDSTEAFEDVGHSDEAREALEPLLVGTL 77          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_ALOSE (Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=CYB5A PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            HN  K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT+DFEDVGHS+ A+ +   + +G++
Sbjct:   16 HNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATEDFEDVGHSTDARELSKTYIIGEL 80          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB51_SCHPO (Probable cytochrome b5 1 OS=Schizosaccharomyces pombe GN=SPBC29A10.16c PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 33/69 (47.83%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  486 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 692
            HN+ KD +++I GKVYDV+ F DDHPGG +++L   G+DAT  ++D+GHS +A  +++E Y+GD+   T
Sbjct:   14 HNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAADELLEEMYIGDLKPGT 82          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_BOVIN (Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            HN+ K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   F +G++
Sbjct:   20 HNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = -3
Query:  489 AGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 698
            A HN  + CW +  GKVYD T +LD+HPGG E +L   G DATD+F  + HSS AKAM+ ++Y+GD+ +S
Sbjct:  506 AAHNTEESCWFVHGGKVYDATPYLDEHPGGAESILIVAGADATDEFNSI-HSSKAKAMLAQYYIGDLVAS 574          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_RABIT (Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            HN  K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   F +G++
Sbjct:   20 HNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_RAT (Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            H D K  W+I+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   + +G++
Sbjct:   20 HKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGEL 84          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_MOUSE (Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            H D K  W+I+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   + +G++
Sbjct:   20 HKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGEL 84          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_CANTR (Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 29/72 (40.28%), Postives = 51/72 (70.83%), Query Frame = -3
Query:  483 AGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTV 698
            A H    D W+I+ GKVY+++ ++D+HPGG+EV+L   G DAT+ F+D+GHS  A  ++++ Y+G++  + +
Sbjct:   17 AQHTTHDDLWVILNGKVYNISNYIDEHPGGEEVILDCAGTDATEAFDDIGHSDEAHEILEKLYIGNLKGAKI 88          
The following BLAST results are available for this feature:
BLAST of CX047395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CYB5_PIG6.621e-1653.85Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3[more]
CYB5_NEUCR6.621e-1652.24Probable cytochrome b5 OS=Neurospora crassa GN=B23... [more]
CYB5_ALOSE6.621e-1653.85Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=... [more]
CYB51_SCHPO6.621e-1647.83Probable cytochrome b5 1 OS=Schizosaccharomyces po... [more]
CYB5_BOVIN8.648e-1653.85Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3[more]
NIA_VOLCA1.129e-1551.43Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]
CYB5_RABIT1.129e-1553.85Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE... [more]
CYB5_RAT4.292e-1550.77Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 S... [more]
CYB5_MOUSE4.292e-1550.77Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2[more]
CYB5_CANTR5.605e-1540.28Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H08-O16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047395 ID=CX047395; Name=CX047395; organism=Citrus sinensis; type=EST; length=700bp
CTTGCACTTAATTAAGGAAATTTAAATAATGTAGGAGAAAGGAAGCCCAA
AGGCCATTTGGACAATTGGTGCTTTCCTTCCTTTCTTTTAGATGAAGATG
CATACGAATAAAAATGAAAGCAAAGCCAAAACGAGGAACTGCAAATTGAT
CATTGCATTCCAAGTCATGCGGGCAGTGAATGGTCACTTATCAAACACAA
GCACATGCCATCACAAAAGATAAAGAACCCTACATTTTCTGGTGATAATA
GTTCCAAACAACTAGTAAAAACAAGGTGCAATGCAACGGATATAGATTTA
TTGTAAATGTATTTTTATCTTGCAAGGTATCATTAAGCGGATTTGGTATA
GAAGCGGATGCCAACAGCCAATCCTAAGATTAGCAGAGGAACTAGGAACT
GGAGGAGCTTTATAATAAACTCGGGTGTCTTGTCTTGGTTGTAGTGAGGC
TGCTTGGGAGGGGTGTACTTGGTCTTGGTGGGAACGGTTGATGAATCAAT
GTCACCCACATAGAATTCATCCATCATCGCTTTTGCACTGCTACTGTGAC
CAACATCCTCAAAGTCATCAGTCGCATCCTTTCCTGTGGCAGACAACAAT
ACCTCGTCTCCACCAGGATGGTCATCCAAGAATTTTGTCACATCATATAC
CTTGCCCTCAATGATAAGCCAACAGTCCTTGCGGTCGTTGTGCCCAGCCT
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