CX047395

Overview
NameCX047395
Unique NameCX047395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: CYB5_MORAP (Cytochrome b5 OS=Mortierella alpina PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = -3
Query:  489 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI--DSS 692
            H  +   +L I GKVYD T F+D+HPGG+EVL+   G+DAT+ FEDVGHS  A+ +M +  VG+   DSS
Sbjct:   15 HTTKDSLYLAIHGKVYDCTGFIDEHPGGEEVLIDEAGRDATESFEDVGHSDEARDIMSKLLVGEFKTDSS 84          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: NIA1_PHAVU (Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris GN=NIA1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            HN+R   W+I+ G VYD T+FL DHPGG++ +L   G D T++FE + HS  AK M++++ +G++
Sbjct:  526 HNNRDSAWIIVNGHVYDCTRFLKDHPGGEDSILLNAGTDCTEEFEAI-HSDKAKKMLEDYRIGEL 589          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            HN    CW+I+ G +YD T+FL DHPGG + +L   G D T++FE + HS  AK M++++ +G++
Sbjct:  553 HNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKMLEDYRIGEL 616          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: NIA2_SOYBN (Inducible nitrate reductase [NADH] 2 OS=Glycine max GN=INR2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  489 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 692
            HN+    W+I+ G VYD T+FL DHPGG + +L   G D T++FE + HS  AK M++++ +G++ ++
Sbjct:  528 HNNADSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKQMLEDYRIGELTTT 594          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: NIA_LOTJA (Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            HN     W+I+ G VYD T+FL DHPGG + +L   G D T++FE + HS  AK M++++ VG++
Sbjct:  532 HNSPDSAWIIVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFEAI-HSDKAKKMLEDYRVGEL 595          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: NIA_CUCMA (Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            HN  +  W+I+ G VYD T+FL DHPGG + +L   G D T++F+ + HS  AK M++++ +G++
Sbjct:  554 HNSPQSAWIIVHGHVYDCTRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGEL 617          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: NIA_CHLVU (Nitrate reductase [NADH] (Fragment) OS=Chlorella vulgaris PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            H   +  W +++GKVYD T FL DHPGG + +L   G DATD+F  + HS  AK  + E+Y+G++
Sbjct:  227 HTTMESAWFVVDGKVYDATPFLKDHPGGADSILLVAGIDATDEFNAI-HSLKAKKQLLEYYIGEL 290          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  489 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 692
            HN+    W+I+ G VYD T+FL DHPGG + +L   G D T++FE + HS  AK M++++ +G++ ++
Sbjct:  524 HNNADSAWIIVHGHVYDWTRFLKDHPGGTDRILINAGTDCTEEFEAI-HSDKAKQMLEDYRIGELTTT 590          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 26/65 (40.00%), Postives = 44/65 (67.69%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            HN  +  W+I+ G +YD T+FL DHPGG + +L   G D T++FE + HS  AK +++++ +G++
Sbjct:  550 HNSAESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 613          
BLAST of CX047395 vs. ExPASy Swiss-Prot
Match: NIA2_BRANA (Nitrate reductase [NADH], clone PBNBR1412 OS=Brassica napus GN=NIA2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 26/65 (40.00%), Postives = 44/65 (67.69%), Query Frame = -3
Query:  498 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 692
            HN  +  W+I+ G +YD T+FL DHPGG + +L   G D T++FE + HS  AK +++++ +G++
Sbjct:  550 HNSVESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 613          
The following BLAST results are available for this feature:
BLAST of CX047395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CYB5_MORAP3.633e-1451.43Cytochrome b5 OS=Mortierella alpina PE=1 SV=1[more]
NIA1_PHAVU1.526e-1244.62Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris G... [more]
NIA2_ARATH3.401e-1243.08Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]
NIA2_SOYBN1.292e-1141.18Inducible nitrate reductase [NADH] 2 OS=Glycine ma... [more]
NIA_LOTJA2.879e-1144.62Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA... [more]
NIA_CUCMA2.879e-1141.54Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 ... [more]
NIA_CHLVU2.879e-1144.62Nitrate reductase [NADH] (Fragment) OS=Chlorella v... [more]
NIA1_SOYBN2.879e-1141.18Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
NIA1_BRANA2.879e-1140.00Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]
NIA2_BRANA4.910e-1140.00Nitrate reductase [NADH], clone PBNBR1412 OS=Brass... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H08-O16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047395 ID=CX047395; Name=CX047395; organism=Citrus sinensis; type=EST; length=700bp
CTTGCACTTAATTAAGGAAATTTAAATAATGTAGGAGAAAGGAAGCCCAA
AGGCCATTTGGACAATTGGTGCTTTCCTTCCTTTCTTTTAGATGAAGATG
CATACGAATAAAAATGAAAGCAAAGCCAAAACGAGGAACTGCAAATTGAT
CATTGCATTCCAAGTCATGCGGGCAGTGAATGGTCACTTATCAAACACAA
GCACATGCCATCACAAAAGATAAAGAACCCTACATTTTCTGGTGATAATA
GTTCCAAACAACTAGTAAAAACAAGGTGCAATGCAACGGATATAGATTTA
TTGTAAATGTATTTTTATCTTGCAAGGTATCATTAAGCGGATTTGGTATA
GAAGCGGATGCCAACAGCCAATCCTAAGATTAGCAGAGGAACTAGGAACT
GGAGGAGCTTTATAATAAACTCGGGTGTCTTGTCTTGGTTGTAGTGAGGC
TGCTTGGGAGGGGTGTACTTGGTCTTGGTGGGAACGGTTGATGAATCAAT
GTCACCCACATAGAATTCATCCATCATCGCTTTTGCACTGCTACTGTGAC
CAACATCCTCAAAGTCATCAGTCGCATCCTTTCCTGTGGCAGACAACAAT
ACCTCGTCTCCACCAGGATGGTCATCCAAGAATTTTGTCACATCATATAC
CTTGCCCTCAATGATAAGCCAACAGTCCTTGCGGTCGTTGTGCCCAGCCT
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