CX047394

Overview
NameCX047394
Unique NameCX047394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_DROME (Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 45/106 (42.45%), Postives = 69/106 (65.09%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYN-QDKTPEFIIKLLQFLVPLLI 320
            HN  KD WL+I   +YDVT FL++HPGG+EVL+   GKDAT++FEDVGHS+ A+ MM ++ +G++  S            +P ++ + +T E  +K   +LVPL++
Sbjct:   17 HNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVGHSNDARDMMKKYKIGELVES---ERTSVAQKSEPTWSTEQQTEESSVK--SWLVPLVL 117          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5B_MOUSE (Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 35/67 (52.24%), Postives = 51/67 (76.12%), Query Frame = 3
Query:    9 NDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 209
            N  ++ W++I G+VYD+T+FL +HPGG+EVLL   G DAT+ FEDVGHS  A+ M+ ++Y+GD+  S
Sbjct:   32 NSAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPS 98          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5B_RAT (Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 3
Query:    9 NDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            N  ++ W++I G+VYD+T+FL +HPGG+EVLL   G DAT+ FEDVGHS  A+ M+ ++Y+GD+
Sbjct:   32 NTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDV 95          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_RHIST (Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 33/69 (47.83%), Postives = 52/69 (75.36%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 212
            H  + D W++I  KVYD+T+F+ +HPGG+EVL+   GKDAT+ FED+GHS  A+ M++E+ +G +D ++
Sbjct:   14 HKTKSDLWVVIHNKVYDITRFVVEHPGGEEVLVDEGGKDATEAFEDIGHSDEAREMLEEYLIGSLDEAS 82          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_CHICK (Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 33/65 (50.77%), Postives = 51/65 (78.46%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            HN+ +  W+I+  ++YD+TKFLD+HPGG+EVL    G DAT++FEDVGHS+ A+A+ + F +G++
Sbjct:   25 HNNSQSTWIIVHHRIYDITKFLDEHPGGEEVLREQAGGDATENFEDVGHSTDARALSETFIIGEL 89          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB52_SCHPO (Probable cytochrome b5 2 OS=Schizosaccharomyces pombe GN=SPCC16A11.10c PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 33/65 (50.77%), Postives = 52/65 (80.00%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            HN R D +++++ KVYD++KFLD HPGG+EVL+   G+DA+  FEDVGHS  A+ ++++FY+G++
Sbjct:   14 HNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEKFYIGNL 78          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_HUMAN (Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            HN  K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ M   F +G++
Sbjct:   20 HNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGEL 84          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_HORSE (Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            HN  K  WLI+  KVYD+TKFL+DHPGG+EVL    G DAT++FED+GHS+ A+ +   F +G++
Sbjct:   20 HNHSKSTWLILHHKVYDLTKFLEDHPGGEEVLREQAGGDATENFEDIGHSTDARELSKTFIIGEL 84          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_PIG (Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            HN+ K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   F +G++
Sbjct:   20 HNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_ALOSE (Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=CYB5A PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            HN  K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT+DFEDVGHS+ A+ +   + +G++
Sbjct:   16 HNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATEDFEDVGHSTDARELSKTYIIGEL 80          
The following BLAST results are available for this feature:
BLAST of CX047394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CYB5_DROME9.162e-1842.45Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5... [more]
CYB5B_MOUSE1.197e-1752.24Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1... [more]
CYB5B_RAT2.666e-1753.13Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b... [more]
CYB5_RHIST7.756e-1747.83Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1[more]
CYB5_CHICK1.728e-1650.77Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4[more]
CYB52_SCHPO2.257e-1650.77Probable cytochrome b5 2 OS=Schizosaccharomyces po... [more]
CYB5_HUMAN5.027e-1655.38Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2[more]
CYB5_HORSE5.027e-1653.85Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3[more]
CYB5_PIG6.566e-1653.85Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3[more]
CYB5_ALOSE6.566e-1653.85Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H08-O16-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047394 ID=CX047394; Name=CX047394; organism=Citrus sinensis; type=EST; length=696bp
CTGGGCACAACGACCGCAAGGACTGTTGGCTTATCATTGAGGGCAAGGTA
TATGATGTGACAAAATTCTTGGATGACCATCCTGGTGGAGACGAGGTATT
GTTGTCTGCCACAGGAAAGGATGCGACTGATGACTTTGAGGATGTTGGTC
ACAGTAGCAGTGCAAAAGCGATGATGGATGAATTCTATGTGGGTGACATT
GATTCATCAACCGTTCCCACCAAGACCAAGTACACCCCTCCCAAGCAGCC
TCACTACAACCAAGACAAGACACCCGAGTTTATTATAAAGCTCCTCCAGT
TCCTAGTTCCTCTGCTAATCTTAGGATTGGCTGTTGGCATCCGCTTCTAT
ACCAAATCCGCTTAATGATACCTTGCAAGATAAAAATACATTTACAATAA
ATCTATATCCGTTGCATTGCACCTTGTTTTTACTAGTTGTTTGGAACTAT
TATCACCAGAAAATGTAGGGTTCTTTATCTTTTGTGATGGCATGTGCTTG
TGTTTGATAAGTGACCATTCACTGCCCGCATGACTTGGAATGCAATGATC
AATTTGCAGTTCCTCGTTTTGGCTTTGCTTTCATTTTTATTCGTATGCAT
CTTCATCTAAAAGAAAGGAAGGAAAGCACCAATTGTCCAAATGGCCTTTG
GGCTTCCTTTCTCCTACATTATTTAAATTTCCTTAATTAAGTGCAA
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