CX047394

Overview
NameCX047394
Unique NameCX047394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: NIA1_MAIZE (Nitrate reductase [NADH] (Fragment) OS=Zea mays PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            H  ++  W+++ G VYD TKFL DHPGG + +L   G D T++F+ + HS  AKA++D + +G++
Sbjct:  260 HASQESAWIVVHGHVYDCTKFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKALLDTYRIGEL 323          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: NIA_PETHY (Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            HN     W+I+ G VYD T+FL DHPGG + +L   G D T++F+ + HS  AK ++++F +G++
Sbjct:  546 HNSADSAWIIVHGHVYDATRFLKDHPGGIDSILINAGTDCTEEFDAI-HSDKAKKLLEDFRIGEL 609          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: NIA1_TOBAC (Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            H+     W+I+ G +YD T+FL DHPGG + +L   G D T++F+ + HS  AK +++EF +G++
Sbjct:  542 HSSADSAWIIVHGHIYDATRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKKLLEEFRIGEL 605          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: NIA_SPIOL (Nitrate reductase [NADH] OS=Spinacia oleracea GN=NIA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 26/68 (38.24%), Postives = 45/68 (66.18%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 209
            HN     W+++ G VY+ T+FL DHPGG + +L   G D T++F+ + HS  AK ++++F +G++ S+
Sbjct:  562 HNTADSAWIVVHGNVYNATRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKRLLEDFRIGELIST 628          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: NIA_CICIN (Nitrate reductase [NADH] OS=Cichorium intybus GN=NIA PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            HN     W+++ G +YD T FL DHPGG + +L   G D T++F+ + HS  AK +++E+ VG++
Sbjct:  545 HNSADSAWIVVHGHIYDCTSFLKDHPGGSDSILLNAGTDCTEEFDAI-HSDKAKKLLEEYRVGEL 608          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: NIA2_HORVU (Nitrate reductase [NADH] (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            H  ++  W+++ G VYD T FL DHPGG + +L   G D T++F+ + HS  AKA++D + +G++
Sbjct:  546 HGSKESAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEFDAI-HSDKAKALLDTYRIGEL 609          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: NIA1_HORVU (Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            H  ++  W+++ G VYD T FL DHPGG + +L   G D T++F+ + HS  AKA++D + +G++
Sbjct:  549 HGSKESAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEFDAI-HSDKAKALLDTYRIGEL 612          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: NIA1_ARATH (Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana GN=NIA1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            HN     W+I+ G +YD T+FL DHPGG + +L   G D T++FE + HS  AK +++++ +G++
Sbjct:  556 HNTADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 619          
The following BLAST results are available for this feature:
BLAST of CX047394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
NIA1_MAIZE4.869e-1141.54Nitrate reductase [NADH] (Fragment) OS=Zea mays PE... [more]
NIA_PETHY6.359e-1141.54Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA... [more]
NIA1_TOBAC6.359e-1140.00Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN... [more]
NIA_SPIOL8.306e-1138.24Nitrate reductase [NADH] OS=Spinacia oleracea GN=N... [more]
NIA_CICIN8.306e-1140.00Nitrate reductase [NADH] OS=Cichorium intybus GN=N... [more]
NIA2_HORVU8.306e-1140.00Nitrate reductase [NADH] (Fragment) OS=Hordeum vul... [more]
NIA1_HORVU8.306e-1140.00Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 S... [more]
NIA1_ARATH8.306e-1140.00Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H08-O16-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047394 ID=CX047394; Name=CX047394; organism=Citrus sinensis; type=EST; length=696bp
CTGGGCACAACGACCGCAAGGACTGTTGGCTTATCATTGAGGGCAAGGTA
TATGATGTGACAAAATTCTTGGATGACCATCCTGGTGGAGACGAGGTATT
GTTGTCTGCCACAGGAAAGGATGCGACTGATGACTTTGAGGATGTTGGTC
ACAGTAGCAGTGCAAAAGCGATGATGGATGAATTCTATGTGGGTGACATT
GATTCATCAACCGTTCCCACCAAGACCAAGTACACCCCTCCCAAGCAGCC
TCACTACAACCAAGACAAGACACCCGAGTTTATTATAAAGCTCCTCCAGT
TCCTAGTTCCTCTGCTAATCTTAGGATTGGCTGTTGGCATCCGCTTCTAT
ACCAAATCCGCTTAATGATACCTTGCAAGATAAAAATACATTTACAATAA
ATCTATATCCGTTGCATTGCACCTTGTTTTTACTAGTTGTTTGGAACTAT
TATCACCAGAAAATGTAGGGTTCTTTATCTTTTGTGATGGCATGTGCTTG
TGTTTGATAAGTGACCATTCACTGCCCGCATGACTTGGAATGCAATGATC
AATTTGCAGTTCCTCGTTTTGGCTTTGCTTTCATTTTTATTCGTATGCAT
CTTCATCTAAAAGAAAGGAAGGAAAGCACCAATTGTCCAAATGGCCTTTG
GGCTTCCTTTCTCCTACATTATTTAAATTTCCTTAATTAAGTGCAA
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