CX047380

Overview
NameCX047380
Unique NameCX047380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.947e-35
Identity = 83/182 (45.60%), Postives = 108/182 (59.34%), Query Frame = -1
Query:  283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELV--KVTQDMKSFKAYDKLRIERVNERHFGAR 822
            KHWQ  V+TWFNQP               K+FPRP A  L+PVV G T++YNMK+RAGRGFTLEELKAAG+  + A TIG++VD RR N++ + L  N QRLK Y++KLV+FPR+    K G++  EE+A A Q   P+   +    T E    K T+  K F AY  L+      +  G R
Sbjct:   15 KHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLKAADSKAKTVGIR 195          
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.461e-35
Identity = 82/174 (47.13%), Postives = 107/174 (61.49%), Query Frame = -1
Query:  283 FNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----IAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 792
            FNQP                I PRP AG LRP V  QT KYN +LR GRGF+L+ELKAAGI KK A  IG+SVD RR+N+S+E LQ NVQRLK Y++KL++FP++  K   GD+  EE+  ATQ++G  +P    I PEK       +T + +  K +D+LR  R ++R  G R
Sbjct:    2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIKPEKARA----ITDEERKVKVFDRLRQARAHKRLAGKR 171          
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.198e-26
Identity = 74/180 (41.11%), Postives = 100/180 (55.56%), Query Frame = -1
Query:  283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822
            KHWQ  V+  F+Q                KI PRP    LRPVV   T+KYN K+RAGRGFTL ELKA GI  K A TIG+SVDHRR+N+S E   +NV RL+ YK+KLV+F ++ +  +       +++    V+ P    APE   +  V+V +      AY  LR+ R  +++ G R
Sbjct:   16 KHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSATFPVEQP----APES-GLRAVEVPEQ----TAYRTLRLARNEKKYKGIR 185          
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.482e-26
Identity = 76/180 (42.22%), Postives = 97/180 (53.89%), Query Frame = -1
Query:  283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822
            KHWQ  VK  FNQ                KI PRP    LRPVV   T+KYN K+RAGRGFT  E+KAAG+    A TIG++VDHRR+N++ E  + NVQRLK Y++K++VFPR  +         + L+TA        PIA  +P VE            AY  LR+ R  +R+ G R
Sbjct:   16 KHWQERVKVHFNQAGKKASRRDARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGKV----PETEQVLSTAAA-----FPIA--QPAVETETRAVQDNGESAYRTLRMARSEKRYKGIR 183          
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.482e-26
Identity = 78/180 (43.33%), Postives = 100/180 (55.56%), Query Frame = -1
Query:  283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822
            KHWQ  VK  F+Q                KI PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFPR     KA ++     A AT       PIA     VE   V  + +S  A+  LR+ R  ++  G R
Sbjct:   16 KHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNG---KAPEAEQVLSAAAT------FPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRGIR 183          
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.351e-26
Identity = 78/180 (43.33%), Postives = 100/180 (55.56%), Query Frame = -1
Query:  283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822
            KHWQ  VK  F+Q                KI PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFPR     KA ++     A AT       PIA     VE   V  + +S  A+  LR+ R  ++  G R
Sbjct:   16 KHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDG---KAPEAEQVLSAAAT------FPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRGIR 183          
The following BLAST results are available for this feature:
BLAST of CX047380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_DICDI4.947e-3545.6060S ribosomal protein L13 OS=Dictyostelium discoid... [more]
RL13_LUMRU6.461e-3547.1360S ribosomal protein L13 OS=Lumbricus rubellus GN... [more]
RL13_CANAL4.198e-2641.1160S ribosomal protein L13 OS=Candida albicans GN=R... [more]
RL13_SACEX5.482e-2642.2260S ribosomal protein L13 OS=Saccharomyces exiguus... [more]
RL13A_YEAST5.482e-2643.3360S ribosomal protein L13-A OS=Saccharomyces cerev... [more]
RL13B_YEAST9.351e-2643.3360S ribosomal protein L13-B OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13G10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13G10-M20-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047380 ID=CX047380; Name=CX047380; organism=Citrus sinensis; type=EST; length=822bp
TTTTTTTTTTTTTTTTAAAGTAGCCAATGCTTTAAGGCTTTGGCAAGAAT
CTACTTCATTCAGGAAAGAATTCAAAACCAAAACAACATTGGATAGGTCC
ATTGCAAATAATATAACCAAGAAATCTTCCCACATTCAAAATAAAATAAC
AATTTCAAGCCTAAAGCTAACAGATTGAAATCACTATAACAAAATGCCAA
AAACAGGCCCACATTCAAAGTGTTGCTTAAACAAGTTTTTTTACTTCTTC
TCTTCCTTTTCAGCCTCTGCAGCCTTCTTCATCCTGGCACCAAAATGGCG
CTCGTTCACACGCTCGATACGGAGTTTGTCATAAGCCTTGAAGGACTTCA
TATCTTGAGTAACCTTAACAAGCTCGACAGTAGGCTTCTCAGGAGCAATG
GGCATGTAAGGTCCTTGTACTTGAGTTGCTGTTGCCAATTCCTCAGGGGC
AGAATCACCAGCCTTGAACTTGCGAGCACGTCTTGGGAAAACAACCAACT
TAGCCTTGTAAGTCTTGAGCCTCTGAACATTAGATTGAAGACCCTCAAGA
GAACGGTTCTTGCGTCGATGATCGACTGAAACACCAATTGTCGGAGCCAG
TTTCTTGGGAATTCCAGCAGCCTTGAGTTCCTCAAGAGTAAAGCCTCTGC
CAGCCCTTAATTTCATGTTGTATTTCAAAGTCTGGCCATGAACGACGGGA
CGAAGCGGCCCAGCAGTAGGGCGAGGGAAGATTTTAACGGCCTTCTTTTG
ACGAGCGACTCGTCGTCGATTTTTGCGAGCAGGTTGGTTGAACCAAGTCT
TGACATAGTTCTGCCAATGCTT
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