CX047377

Overview
NameCX047377
Unique NameCX047377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.528e-36
Identity = 81/211 (38.39%), Postives = 115/211 (54.50%), Query Frame = -3
Query:  193 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYP-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRF-KVMPPECK 819
            G V AFYLS+ ++    HDEID E LG+     ++LQTN++  G     RE++ Y WFDPT ++H YSI+WN + IVF VD VP+R F N+      +P  +PM +Y ++W+   WAT GG    ++  APF+ +     + GC  S +A    +  K         D  +F  L   Q   L W R+K   Y+YC DT R+  + PPECK
Sbjct:   91 GTVTAFYLSSQNA---EHDEIDFEFLGNRTGQPYILQTNVFTGG--KGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCEASVNAKFCDTQGKRW------WDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDTKRYPHISPPECK 290          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.528e-36
Identity = 79/211 (37.44%), Postives = 111/211 (52.61%), Query Frame = -3
Query:  193 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYP-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRF-KVMPPECK 819
            G V A+YLS+       HDEID E LG++    +VL TN++A G     RE++FY WFDPT   H YS++W   HI+F+VDNVP+R F N       +P ++PM +Y ++W+   WAT GG    ++  APF         A C +S+ +S    C     SS    + Q    L+      L W ++  M Y YC D  RF +  PPEC+
Sbjct:   85 GTVTAYYLSSEGP---THDEIDFEFLGNETGKPYVLHTNVFAQG--KGNREQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAACTVSSGSS---FCDPKFKSSFTNGESQVANELNAYGRRRLRWVQKYFMIYDYCSDLKRFPQGFPPECR 287          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.446e-36
Identity = 81/211 (38.39%), Postives = 117/211 (55.45%), Query Frame = -3
Query:  196 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAF--SSVYPS-KPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 819
            GVV A+Y+ + +      DEID E LG+     +++QTN+Y NG  +  RE +   WFDPT  +H YSI+WN+H +VF VD VP+R + N+     +  +P+ KPM ++ +IW+   WAT GG    ++K APFV S  +  + GC   +    PA  S  + +  D  D      LSK Q     W +R L+ Y YCKD+ RF  +P EC
Sbjct:   83 GVVTAYYMCSENGAGPERDEIDFEFLGNRTGQPYIIQTNVYKNG--TGNREMRHSLWFDPTKDYHTYSILWNNHQLVFFVDRVPIRVYKNSDKVPNNDFFPNQKPMYLFSSIWNADDWATRGGLEKTDWKKAPFVSSYKDFAVEGCRWKD--PFPACVSTTTENWWDQYDAWH---LSKTQKMDYAWVQRNLVVYDYCKDSERFPTLPWEC 286          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 7.584e-36
Identity = 85/213 (39.91%), Postives = 116/213 (54.46%), Query Frame = -3
Query:  193 GVVLAFYL-SNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYPS-KPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNS-ASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRF-KVMPPECK 819
            G V A+YL S  D++    DEID E LG+   + + + TN+Y  G     RE++F+ WFDPTA  H YS++WN HHIVF+VD++PVREF N       YP  +PM +Y ++W+  QWAT GG    ++  APF  S        CV S   +S PA   +  +  LD       T   K +V      +RK M Y+YC DT RF +  P EC+
Sbjct:   88 GTVTAYYLKSKGDTW----DEIDFEFLGNLTGDPYTMHTNVYTQG--KGDREQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADACVSSGGRSSCPAGSPRWFSQRLD------LTAEDKMRVV-----QRKYMIYNYCTDTKRFPQGFPKECR 283          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.207e-35
Identity = 80/210 (38.10%), Postives = 112/210 (53.33%), Query Frame = -3
Query:  196 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYP-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRF-KVMPPEC 819
            G V A+YLS   S     DEID E LG+     +V+ TN++  G     RE +FY WFDPTA  H Y+++WN  +I+FLVD +P+R F N  A    YP S+PM +Y ++W+   WAT GGK   ++  APF  S        C    S     +C+  S S +       +TTL+  Q+  L W ++  M Y+YC D  RF + +P EC
Sbjct:   85 GTVTAYYLS---SKGETWDEIDFEFLGNVTGQPYVIHTNVFTGG--KGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYRSFNDVDCCSRTSIWNWVTCNANSNSWM-------WTTLNSNQLGQLKWVQKDYMIYNYCTDFKRFPQGLPTEC 282          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.882e-35
Identity = 81/210 (38.57%), Postives = 112/210 (53.33%), Query Frame = -3
Query:  196 GVVLAFYL-SNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYPS-KPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 819
            G V AFY+ S+ DS     DE+D E LG+     + +QTN++A+G     RE++   WFDP+   H Y+I WN   IVF VDNVP+R + N  A    YP  +PM VY T+W+   WAT GG   +N+  APF     + ++ GC +   A  P       A+S +  +G  +  LS  +  +  W R   M Y YC D +RF V PPEC
Sbjct:   92 GTVTAFYMNSDTDSV---RDELDFEFLGNRSGQPYTVQTNVFAHG--KGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPFYAYYKDFDIEGCPVPGPADCP-------ANSKNWWEGSAYHQLSPVEARSYRWVRVNHMVYDYCTDKSRFPVPPPEC 289          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.882e-35
Identity = 82/216 (37.96%), Postives = 111/216 (51.39%), Query Frame = -3
Query:  196 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYP-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMA-GCVLS--NSASAPASCSKGSASSLDPVDGQQFTT---LSKQQVAALDWSRRKLMFYSYCKDTTRF-KVMPPEC 819
            G V  FYL    S     DEID E LG+   + +++ TN+Y  G     RE++FY WFDPTA  H YSI+WN  HIVF +D  P+REF N       YP ++PM +Y ++W+   WAT GG    N+   PFV S         CV S  N  +  + CS G ++S       ++ +   +       L W +RK M Y+YCKD  RF   +P EC
Sbjct:   86 GTVTTFYLK---SQGLTWDEIDFEFLGNVSGDPYIVHTNVYTQG--KGDREQQFYLWFDPTAAFHNYSILWNPSHIVFYIDGKPIREFKNLEVLGVAYPKNQPMRMYGSLWNADDWATRGGLVKTNWSQGPFVASFMNYNSENACVWSIVNGTTTTSPCSPGDSTSSSSSSTSEWFSQRGMDSSSKKVLRWVQRKFMVYNYCKDKKRFSNGLPVEC 296          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.882e-35
Identity = 78/210 (37.14%), Postives = 117/210 (55.71%), Query Frame = -3
Query:  196 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYPS-KPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRF-KVMPPEC 819
            G V+A+Y+S+      N DEID E LG+     ++LQTN+YA G     REE+ + WFDP    H YSI+WN H IVF+VD +P+R + N G     YP  +PMSV  ++W+G  WAT GG   +++   PFV S  + ++  C+   + S    C+  S  +    +  +F++L++ Q     W R+  + Y YC+D  RF   +P EC
Sbjct:   95 GTVVAYYMSSDQP---NRDEIDFEFLGNVNGQPYILQTNVYAEG--LDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRNHGEKGVAYPRLQPMSVQASLWNGESWATRGGHDKIDWSKGPFVASFGDYKIDACIWIGNTS---FCNGESTENW--WNKNEFSSLTRVQKRWFKWVRKYHLIYDYCQDYGRFNNKLPKEC 294          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.916e-35
Identity = 77/210 (36.67%), Postives = 116/210 (55.24%), Query Frame = -3
Query:  193 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYP-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPECK 819
            G V AFY+ N+D+     DE+D E LG+     + +QTNI+A+G     RE++   WFDP+  +H Y+I+W+  HIVF VD+VP+RE+ N  A +  YP S+PM VY T+W+   WAT GG   +++  APF     + ++ GC +      P++            +G  + +L+  +     W R   M Y YC D +RF V PPEC+
Sbjct:   93 GTVTAFYM-NSDTATVR-DELDFEFLGNRSGQPYSVQTNIFAHG--KGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDIEGCPVPGPTFCPSNPHNW-------WEGYAYQSLNAVEARRYRWVRVNHMVYDYCTDRSRFPVPPPECR 291          
BLAST of CX047377 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.385e-35
Identity = 80/210 (38.10%), Postives = 110/210 (52.38%), Query Frame = -3
Query:  196 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPVREFPNTGAFSSVYP-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVVSLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRF-KVMPPEC 819
            G V A+YLS   S     DEID E LG+     +VL TN++  G     RE +FY WFDPTA  H Y+++WN  +I+FLVD +P+R F N  A    YP S+PM +Y ++W+   WAT GGK   ++  APF  S        C    S     +C+  S S +       +TTL+  Q   + W +   M Y+YC D  RF + +P EC
Sbjct:   84 GTVTAYYLS---SKGETWDEIDFEFLGNVTGQPYVLHTNVFTGG--KGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYKSFNDVDCCSRTSLLNWVTCNANSNSWM-------WTTLNSNQYGQMKWVQDDYMIYNYCTDFKRFPQGLPTEC 281          
The following BLAST results are available for this feature:
BLAST of CX047377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH_SOYBN1.528e-3638.39Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH16_ARATH1.528e-3637.44Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ARATH4.446e-3638.39Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH25_ARATH7.584e-3639.91Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH12_ARATH2.207e-3538.10Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH2.882e-3538.57Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH21_ARATH2.882e-3537.96Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH10_ARATH2.882e-3537.14Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH6_ARATH4.916e-3536.67Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH13_ARATH8.385e-3538.10Putative xyloglucan endotransglucosylase/hydrolase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_13G08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13G08-M16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047377 ID=CX047377; Name=CX047377; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTTTTTTTTTTTTAAATAACTATCCCATAAATAATTGAGTTATTGG
TTCATTACTTGATATAAATAAATACAGAAAATTTGCCTTCTTTGTTATTC
ATTTCCTCTCCGATGGGGAGAAGAATACGAAATTAATAACAAAATAAAGG
GGGAAAAAAAGAAGAAGAAGTGATCTCTAATCTCTTTAGTTATTTGCACT
CTGGTGGCATGACTTTAAATCTTGTCGTATCCTTACAGTAAGAGTAGAAC
ATGAGCTTTCTTCTAGACCAATCCAATGCAGCGACTTGCTGCTTTGAAAG
TGTAGTAAATTGTTGTCCATCAACTGGATCCAAGCTTGAAGCACTTCCCT
TCGAGCACGAAGCAGGAGCAGAGGCAGAATTTGATAACACACAGCCAGCC
ATTTCCATTTCAGCCAGTGAAACCACAAATGGTGCATACTTGTAATTAAC
TGGATATTTTCCTCCATGAGTTGCCCACTGTGATCCATCCCATATTGTCA
CATAAACTGACATTGGCTTTGATGGGTATACAGAAGAAAAGGCCCCAGTG
TTTGGAAACTCTCTCACCGGTACATTGTCCACTAGAAATACAATGTGATG
GCTGTTCCAGATAATGCTGTAGTAATGGTGCTGTGCCGTTGGATCGAACC
AGAAGTAAAATTTCTCTTCTCTTCCGGTACTGACACCTCCATTCGCATAT
ATGTTTGTTTGTAGAACCCAGTCATTTCTCTTATCATGACCAAGCAATTC
AATATCAATTTCATCATGGTTGTGCGGATAGCTATCTGCATTAGACAAGT
AGAAGGCAAGTACAACTCCGG
back to top