CX047363

Overview
NameCX047363
Unique NameCX047363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 8.167e-23
Identity = 47/96 (48.96%), Postives = 64/96 (66.67%), Query Frame = -1
Query:  196 VNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 483
            +N+     P   GE  VDC  +  +P +SF +GGK FDL   +Y+L+V +  +  C+SGF  +D+PPP GPLWILGDVF+G+Y+T FD G  RVGF
Sbjct:  288 INKAIGGTPIMNGEYMVDCSLIPKLPKISFVLGGKSFDLEGADYVLRVAQMGKTICLSGFMGIDIPPPNGPLWILGDVFIGKYYTEFDMGNDRVGF 383          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.376e-22
Identity = 44/89 (49.44%), Postives = 64/89 (71.91%), Query Frame = -1
Query:  196 MPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 462
            +P   GE  +DC K+ ++P +SF +GGK + L+ E+Y+LK  +G +  C+SG   +++PPP GPLWILGDVF+G+Y+TVFD    RVGF
Sbjct:  304 IPLIQGEYMIDCKKVPTLPTISFNVGGKTYSLTGEQYVLKESQGGKTICLSGLMGLEIPPPAGPLWILGDVFIGQYYTVFDRESNRVGF 392          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.294e-22
Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = -1
Query:  199 MPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVG 462
            +P   GE  + C K+S++P V+  +GGK++ LS E+Y LKV +G +  C+SGF  MD+PPP GPLWILGDVF+G Y+TVFD  + RVG
Sbjct:  316 VPLIQGEYMIPCEKVSTLPDVTLKLGGKLYKLSSEDYTLKVSQGGKTICLSGFMGMDIPPPGGPLWILGDVFIGCYYTVFDRDQNRVG 403          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.540e-21
Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = -1
Query:  199 MPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVG 462
            +P   GE  + C K+ S+P V+ T+GGK + LS E Y LKV +  +  C+SGF  MD+PPP GPLWILGDVF+GRY+TVFD    RVG
Sbjct:  253 VPLIQGEYMIPCEKVPSLPDVTVTLGGKKYKLSSENYTLKVSQAGQTICLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDLNRVG 340          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.431e-21
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = -1
Query:  196 PSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 459
            P   G+  + C K+SS+P+V+  +GGK + L+ E+Y+ KV    E  C+SGF+ +DVPPP GPLWILGDVF+G Y+TVFD     VGF
Sbjct:  307 PLIKGQYVISCDKISSLPVVTLMLGGKPYQLTGEQYVFKVSAQGETICLSGFSGLDVPPPGGPLWILGDVFIGPYYTVFDRDNDSVGF 394          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.481e-21
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = -1
Query:  196 GESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQ-CISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 447
            GE  V+C K+ S+P ++F +GG+ FDL  ++YIL++  G     C+SGF  MD+P P GPLWILGDVF+GR+++VFD G  RVGF
Sbjct:  307 GEYEVECSKIPSLPNITFNLGGQNFDLQGKDYILQMSNGNGGSTCLSGFMGMDIPAPAGPLWILGDVFIGRFYSVFDHGNKRVGF 391          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATE_RANCA (Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.471e-20
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = -1
Query:  196 GESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 447
            GE  V C  LS MP V+FTI G  + L+PE+Y+L+ G G    C SGF  +D+ PP GPLWILGDVF+G+Y++VFD G  RVGF
Sbjct:  304 GEYGVSCSTLSLMPSVTFTINGLDYSLTPEQYMLEDGGG---YCSSGFQGLDISPPSGPLWILGDVFIGQYYSVFDRGNNRVGF 384          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATEA_XENLA (Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.212e-19
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = -1
Query:  199 GESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVG 447
            G+  VDC  L+ MP V+FTI G  + ++P++Y L+ G G    C SGF  +D+PPP GPLWILGDVF+G+Y++VFD G  RVG
Sbjct:  304 GDYEVDCSVLNEMPTVTFTINGIGYQMTPQQYTLQDGGGV---CSSGFQGLDIPPPAGPLWILGDVFIGQYYSVFDRGNNRVG 383          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.719e-18
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = -1
Query:  238 MPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGR 462
            +P   GE  + C K+SS+P V+  +GGK + LSPE+Y LKV +     C+SGF  MD+PPP GPLWILGDVF+GR
Sbjct:  291 VPLIQGEYMIPCEKVSSLPQVTLKLGGKDYTLSPEDYTLKVSQAGTTVCLSGFMGMDIPPPGGPLWILGDVFIGR 365          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATEB_XENLA (Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.302e-17
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = -1
Query:  199 GESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVG 447
            G+  VDC  L+ MP ++FTI G  + ++P++Y L+  +G    C SGF  +D+ PP GPLWILGDVF+G+Y++VFD G  RVG
Sbjct:  304 GDYEVDCTVLNKMPTMTFTINGIGYQMTPQQYTLQDDDGV---CSSGFQGLDISPPAGPLWILGDVFIGQYYSVFDRGNNRVG 383          
The following BLAST results are available for this feature:
BLAST of CX047363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
ASPP_AEDAE8.167e-2348.96Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
CATD_CLUHA2.376e-2249.44Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATD_CANFA5.294e-2253.41Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
CATD_PIG1.540e-2154.55Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]
CATD_CHICK3.431e-2151.14Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
ASP3_CAEEL4.481e-2152.94Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]
CATE_RANCA6.471e-2055.95Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1[more]
CATEA_XENLA3.212e-1953.01Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=... [more]
CATD_SHEEP2.719e-1854.67Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
CATEB_XENLA2.302e-1749.40Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13F12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13F12-K24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047363 ID=CX047363; Name=CX047363; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTGAAAGAAAAAATATTTACAAGCAAACATGAAATCGTTTTATAG
CCATCACGTCTGAGGCTAACGGCTTCACATGATTTTATCACCAACTCCAT
TATAAGGGTACATAATATATATCTTAGCGAATAGAAGACATGAAGGATTA
TATCGAAAGAGAAGCGGCCTAAAGATCCATTTATGCAGCCTCAGCAAATC
CGACTCTGAGCTCACCGAAATCAAAGACTGTATGGTAGCGACCCATGAAG
ACGTCTCCCAAGATCCAGAGAGGACCACGGGGAGGGGGAACATCCATAGC
AGTAAATCCACTAATGCACTGAGCCTCAGGACCTTCGCCCACCTTCAGAA
TGTACTCCTCTGGAGAGAGGTCAAACACTTTGCCACCAATAGTGAACGAA
ACAATAGGCATGGAAGAGAGCTTTCCACAATCAACTGCTGATTCTCCCAT
TGGGCTTGGCATTCGGTCACAAAGCTCATTGACATATTGCAAAATGTTTT
CTTGTGTTTGATTCTGCTGAAGCTGGTTTTGCATCCATACAACTGCCATC
TCACAAGCAGAGCACATAGCATTATTAAGAACACCGGAAGACTTGTCGTT
GCTCTCATCCACCACACTCTCGATGCCCATACTAACACCACGTTTTCCAT
CAAAGGTGCACAATCCCATTTGGGAGCAAATTTTCTTAGGATGTGCCTCA
AACAGAAGAAGATCCAAAATTGTTTGTCCGTATTGCTCAACAACTGCCTT
GCATTGTTGGCTAACAACTCCAGAGGCTCCAATAGCATGATTTATCATGG
TAATCACAGTCGTTGGACCTGCCAACAAAGAAGTACCAGAATCTGCAATT
GCTGAACAACCTCCAGCACAATATCC
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