CX047363

Overview
NameCX047363
Unique NameCX047363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = -1
Query:  199 VNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVG 483
            +N+     P   G+  + C K  ++P VSF +GG  F+L+ ++Y++K+ +     C+ GF A+D+P P GPLWILGDVF+G Y  VFD G+  VG
Sbjct:  294 LNKAIGGYPFLNGQYFIQCSKTPTLPPVSFHLGGVWFNLTGQDYVIKILQSDVGLCLLGFQALDIPKPAGPLWILGDVFLGPYVAVFDRGDKNVG 388          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.926e-17
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = -1
Query:  205 MPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELR 462
            +P   GE  + C ++  +P VSF +GG  F+L+  +Y+++        C+SGF A+DVPPP GP WILGDVF+G Y  VFD G+++
Sbjct:  306 IPLLAGEYIILCSEIPKLPAVSFLLGGVWFNLTAHDYVIQTTRNGVRLCLSGFQALDVPPPAGPFWILGDVFLGTYVAVFDRGDMK 391          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATE_RAT (Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 9.670e-16
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  199 SPM-GESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVG 456
            +PM GE AVDC  L+ MP V+F I G  + LSP  YIL         C SGF  +D+ PP GPLWILGDVF+ ++++VFD G  +VG
Sbjct:  306 TPMDGEYAVDCATLNMMPNVTFLINGVSYTLSPTAYILPDLVDGMQFCGSGFQGLDIQPPAGPLWILGDVFIRKFYSVFDRGNNQVG 392          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.670e-16
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  199 GESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVG 447
            GE AV+C  L+ MP V+FTI G  + LSP  Y L         C SGF  +D+ PP GPLWILGDVF+ ++++VFD G  RVG
Sbjct:  313 GEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVG 395          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATE_MOUSE (Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  199 GESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVG 447
            GE AVDC  L +MP V+F I    + L+P +YIL         C SGF  +D+PPP GPLWILGDVF+ ++++VFD G  +VG
Sbjct:  309 GEYAVDCATLDTMPNVTFLINEVSYTLNPTDYILPDLVDGMQFCGSGFQGLDIPPPAGPLWILGDVFIRQFYSVFDRGNNQVG 391          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.186e-15
Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = -1
Query:  196 DCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 432
            DC  ++++P V+ T+ G+ F L+P+EY+L+V E  + +C+SGF  M +    G  WILGDVF+  Y+TVFDFG  +VGF
Sbjct:  301 DCSVINTLPNVTITVAGREFVLTPKEYVLEVTEFGKTECLSGF--MGIELNMGNFWILGDVFISAYYTVFDFGNKQVGF 377          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.824e-14
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = -1
Query:  199 GESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVG 447
            GE  + C  + S+P + FTI G  + LSP  YIL+     +  C SGF  MDVP   G LWILGDVF+ +Y+TVFD    +VG
Sbjct:  302 GEMVISCSSIDSLPDIVFTINGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVG 380          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CARP_NEUCR (Vacuolar protease A OS=Neurospora crassa GN=pep-4 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.824e-14
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  199 GESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVG 447
            G+  +DCGK SS+  V+FT+ G  F L PE+YIL+        C+S F  MD+P P GPL ILGD F+ +Y++++D G   VG
Sbjct:  312 GQFTIDCGKKSSLEDVTFTLAGYNFTLGPEDYILEAS----GSCLSTFMGMDMPAPVGPLAILGDAFLRKYYSIYDLGADTVG 390          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.824e-14
Identity = 42/61 (68.85%), Postives = 45/61 (73.77%), Query Frame = -1
Query:  196 VFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 378
            VF L+PE+YILK   G   QCISGFTAMD     GPLWILGDVFM  YHTVFD+G L VGF
Sbjct:  205 VFGLTPEQYILK---GEATQCISGFTAMDATL-LGPLWILGDVFMRPYHTVFDYGNLLVGF 261          
BLAST of CX047363 vs. ExPASy Swiss-Prot
Match: PEPA_RHIFE (Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.111e-14
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = -1
Query:  199 GESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVG 447
            GE  V C  ++++P + FTI G  + L P  Y+L+  +G    C SGF  MD+P   G LWILGDVF+ +Y TVFD G  +VG
Sbjct:  303 GEMVVSCSAINTLPNIVFTINGVQYPLPPSAYVLQSQQG----CTSGFQGMDIPTSSGELWILGDVFIRQYFTVFDRGNNQVG 381          
The following BLAST results are available for this feature:
BLAST of CX047363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
NAPSA_MOUSE3.006e-1742.11Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
NAPSA_HUMAN3.926e-1744.19Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CATE_RAT9.670e-1650.57Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3[more]
CATE_HUMAN9.670e-1650.60Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
CATE_MOUSE1.263e-1549.40Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1[more]
CATD_DICDI8.186e-1546.84Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]
PEPA_PIG1.824e-1446.99Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3[more]
CARP_NEUCR1.824e-1445.78Vacuolar protease A OS=Neurospora crassa GN=pep-4 ... [more]
CARDH_CYNCA1.824e-1468.85Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PEPA_RHIFE3.111e-1445.78Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13F12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13F12-K24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047363 ID=CX047363; Name=CX047363; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTGAAAGAAAAAATATTTACAAGCAAACATGAAATCGTTTTATAG
CCATCACGTCTGAGGCTAACGGCTTCACATGATTTTATCACCAACTCCAT
TATAAGGGTACATAATATATATCTTAGCGAATAGAAGACATGAAGGATTA
TATCGAAAGAGAAGCGGCCTAAAGATCCATTTATGCAGCCTCAGCAAATC
CGACTCTGAGCTCACCGAAATCAAAGACTGTATGGTAGCGACCCATGAAG
ACGTCTCCCAAGATCCAGAGAGGACCACGGGGAGGGGGAACATCCATAGC
AGTAAATCCACTAATGCACTGAGCCTCAGGACCTTCGCCCACCTTCAGAA
TGTACTCCTCTGGAGAGAGGTCAAACACTTTGCCACCAATAGTGAACGAA
ACAATAGGCATGGAAGAGAGCTTTCCACAATCAACTGCTGATTCTCCCAT
TGGGCTTGGCATTCGGTCACAAAGCTCATTGACATATTGCAAAATGTTTT
CTTGTGTTTGATTCTGCTGAAGCTGGTTTTGCATCCATACAACTGCCATC
TCACAAGCAGAGCACATAGCATTATTAAGAACACCGGAAGACTTGTCGTT
GCTCTCATCCACCACACTCTCGATGCCCATACTAACACCACGTTTTCCAT
CAAAGGTGCACAATCCCATTTGGGAGCAAATTTTCTTAGGATGTGCCTCA
AACAGAAGAAGATCCAAAATTGTTTGTCCGTATTGCTCAACAACTGCCTT
GCATTGTTGGCTAACAACTCCAGAGGCTCCAATAGCATGATTTATCATGG
TAATCACAGTCGTTGGACCTGCCAACAAAGAAGTACCAGAATCTGCAATT
GCTGAACAACCTCCAGCACAATATCC
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