CX047346

Overview
NameCX047346
Unique NameCX047346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047346 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.502e-23
Identity = 64/138 (46.38%), Postives = 79/138 (57.25%), Query Frame = -2
Query:  424 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWS-GRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSG-KCSYAGC 831
            F+    A T  + N C   VWP     AG P+   GGF+L   ++  I +P   S GR WGR GC F+ +GRG CATGDC G+L C   G   PATLAE T+G  QDFYD+S++DGYN+AM      G   KC  A C
Sbjct:   15 FAAGASAATFRITNNCGFTVWP-----AGIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG--QPATLAEYTIGGSQDFYDISVIDGYNLAMDFSCSTGVALKCRDANC 142          
BLAST of CX047346 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.892e-22
Identity = 63/138 (45.65%), Postives = 79/138 (57.25%), Query Frame = -2
Query:  424 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWS-GRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSG-KCSYAGC 831
            F+    A T  + N C   VWP     AG P+   GGF+L   ++  I +P   S GR WGR GC F+ +GRG CATGDC G+L C   G   PATLAE T+G  QDFYD+S++DG+N+AM      G   KC  A C
Sbjct:   15 FAAGASAATFRITNNCGFTVWP-----AGIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG--QPATLAEYTIGGSQDFYDISVIDGFNLAMDFSCSTGVALKCRDANC 142          
BLAST of CX047346 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.086e-21
Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = -2
Query:  397 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLG--QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCP 831
            F+    A T  + N C   +WP     AG P+   GGF+L   +  +I +P    +GR W R GC F+  G G C TGDCGG L C+ + G PPATLAE T+G    QDFYD+S++DG+N+AM          CS    +   +  CP
Sbjct:   14 FAAGASAATFNIKNNCGSTIWP-----AGIPV--GGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCS-LSGQPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDF-------SCSTGDALQCRDPSCP 145          
BLAST of CX047346 vs. ExPASy Swiss-Prot
Match: PR1C_HORVU (Pathogenesis-related protein 1C OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.948e-21
Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = -2
Query:  397 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLG--QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCP 831
            F+    A T  + N C   +WP     AG P+   GGF+L   +  +I +P    +GR W R GC F+  G G C TGDCGG L C+ + G PPATLAE T+G    QDFYD+S++DG+N+AM          CS    +   +  CP
Sbjct:   14 FAAGASAATFNIKNNCGSTIWP-----AGIPV--GGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCS-LSGRPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDF-------SCSTGDALQCRDPSCP 145          
BLAST of CX047346 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.771e-20
Identity = 59/148 (39.86%), Postives = 78/148 (52.70%), Query Frame = -2
Query:  397 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLG--QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCP 831
            F+    A T  + N C   +WP     AG P+   GGF L   +  +I +P    +GR W R GC F+  G G C TGDCGG L C+ + G PPATLAE T+G    QDFYD+S++DG+N+AM          CS    +   +  CP
Sbjct:   14 FAAGASAATFNIKNNCGFTIWP-----AGIPV--GGGFALGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCS-LSGRPPATLAEYTIGGGSTQDFYDISVIDGFNLAMDF-------SCSTGDALQCRDPSCP 145          
BLAST of CX047346 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.499e-19
Identity = 55/162 (33.95%), Postives = 81/162 (50.00%), Query Frame = -2
Query:  349 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKS 831
            F+ +  A T T+ N C + VWP         +   GG +L   + +T+ +P    SGR WGR GC F+  G G C TGDC G+L C   G   PATLAE ++G + D+YD+S++D YN+AM          CS    +   +  CP       + +  +C +
Sbjct:   15 FAASASAATFTITNNCGYTVWPAA-------IPVGGGQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFNG-GSGSCQTGDCAGALSCTLSG--QPATLAEFSIGGEHDYYDISVIDVYNLAMDF-------SCSTGDALQCRDSSCPDAYHQPDDPKTHSCNT 159          
BLAST of CX047346 vs. ExPASy Swiss-Prot
Match: PRR3_JUNVI (Pathogenesis-related protein (Fragment) OS=Juniperus virginiana PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.605e-13
Identity = 44/99 (44.44%), Postives = 55/99 (55.56%), Query Frame = -2
Query:  520 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQ 813
            A    + N+C + VW     +AG P    GG +L   + +T+ L     S RFWGR GC FDASG+G C TGDCG  L C  + G+ PATLAE T   Q
Sbjct:   19 AVKFDIKNQCGYTVW-----AAGLP---GGGKRLDQGQTWTVNLAAGTASARFWGRTGCTFDASGKGSCQTGDCGRQLSCT-VSGAVPATLAEYTQSDQ 108          
The following BLAST results are available for this feature:
BLAST of CX047346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RST2_AVESA6.502e-2346.38Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
RST1_AVESA1.892e-2245.65Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
PR1A_HORVU6.086e-2139.86Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
PR1C_HORVU7.948e-2139.86Pathogenesis-related protein 1C OS=Hordeum vulgare... [more]
TLP_WHEAT1.771e-2039.86Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
RST4_AVESA1.499e-1933.95Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
PRR3_JUNVI1.605e-1344.44Pathogenesis-related protein (Fragment) OS=Juniper... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13F03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13F03-K6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047346 ID=CX047346; Name=CX047346; organism=Citrus sinensis; type=EST; length=898bp
TTTTTGATACCAACAAACTACCGTACCATGATATTATTACTAGTAAACAT
AACATAACATATGATATAATAATAATAATCTTATCTATTACAAATGAACT
TGATAGCGTATGTAGTAGTAGTGGTAGATAATGGGTATAAAAATCTAACG
GCGATGGCGGGGGCAGAAAGTGAGCAAGTAGTTGCTGCCGGTGCAAGTAG
CAATACTAGTGGGATCATCATAAGCATAGCTGTAAGCTCTGGGACAAGCG
GCCTTGAAAATCCTGGAGTAAGCAGTGGGCTTGCAGGATTGAGGATTCCC
AAAGCTCCCAGTGCAGCAATACCTGGGCGAGTTGAAAGCGAAACAAGCAC
TTTTGCAGGCCACCACTCTGCTGTTGGACCTCACTTGTAGCCCCGCGGGA
CACATCAAGTTCAGGTCACTCACACACCCAGCGTAGCTGCATTTCCCGGA
GCCTCTGATGGGCAAAATCGACATTGCGATGTTGTAACCGTCGACCAGGC
TCACGTCGTAGAAGTCCTGCTGCTGCCCCAGCGTGATTTCGGCGAGGGTG
GCCGGCGGGCTGCCGCCTATGCCGTTGCAGAAGAGCGATCCGCCGCAGTC
CCCGGTGGCGCAGCGGCCCCGGCCTGAGGCGTCGAACCTGCATCCATGGC
GACCCCAGAAGCGCCCGGACCAGAGGGGCGGTAGGCGTATGGTGTAGGCC
TTGTTTGGTGGGAGCTTGAAGCCGCCACGTGCCAGTAGTGGCTTGCCTGC
GCTCGCTTGTATTCCGGGCCAAACTGGGTGCTCGCATTTGTTGAATAATG
TGATTGTTGTAGCTTTGATATTGTGAGAGAAGAGGACGATGGTGGTGAGC
AAGAGAGCGAGTAGAGATCTAAGCAGCATTGTTACTGCCATGGCTGAA
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