CX047341

Overview
NameCX047341
Unique NameCX047341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047341 vs. ExPASy Swiss-Prot
Match: CP4AA_RAT (Cytochrome P450 4A10 OS=Rattus norvegicus GN=Cyp4a10 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 44/166 (26.51%), Postives = 69/166 (41.57%), Query Frame = -3
Query:  283 ETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXESKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXGRLVQNFELLPPP 780
            +TT   + W    L  HPE Q++ R E+ +VLG G  IT     ++PY    IKE LRL   +P +V  ++       G  +P   ++ ++ + L +NP  W                  ++  +   +LPF  G R+C                 +  FELLP P
Sbjct:  323 DTTASGVSWIFYALATHPEHQQRCREEVQSVLGDGSSITWDHLDQIPYTTMCIKEALRLYPPVPGIVRELSTSVTFPDGRSLPKGIQVTLSIYGLHHNPKVWPNPEVFDPSRFAP-----DSPRHSHSFLPFSGGARNCIGKQFAMSEMKVIVALTLLRFELLPDP 483          
BLAST of CX047341 vs. ExPASy Swiss-Prot
Match: CP3A9_RAT (Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 51/183 (27.87%), Postives = 82/183 (44.81%), Query Frame = -3
Query:  289 EINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXESKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXGRLVQNFELLP 837
            EI   +V++I      A  ETT  ++ + +  L  HP+IQKKL++E+D  L      T     ++ YL  V+ ETLRL   I   +  +   D ++ G  +P  + +++  + L  +P  W +              K + N N + YLPFG G R+C               R++QNF   P
Sbjct:  294 EIVAQSVIFIF-----AGYETTSSALSFVLYLLAIHPDIQKKLQDEIDAALPNKAHATYDTLLQMEYLDMVVNETLRL-YPIAGRLERVCKTDVEINGVFIPKGTVVMIPTFALHKDPHYWPE---PEEFRPERFSKKNQDNINPYMYLPFGNGPRNCIGMRFALMNMKVALFRVLQNFSFQP 467          
BLAST of CX047341 vs. ExPASy Swiss-Prot
Match: CP3A6_RABIT (Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 53/194 (27.32%), Postives = 93/194 (47.94%), Query Frame = -3
Query:  301 ILDAQTKGEINE----DNVLYIVENINV--AAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDT-HKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXESKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXGRLVQNF 861
            ++++Q   EI+     D++  + ++I +  A  ETT  ++ + +  L  HP++Q+KL+ E+DT+L P  ++   DT  K+ YL  V+ ETLRL   I   +  +   D  + G  +P  + +++  + L  +P  W +              K + N N + Y PFG G R+C               RL+QNF
Sbjct:  273 MINSQNSKEIDSHKALDDIEVVAQSIIILFAGYETTSSTLSFIMHLLATHPDVQQKLQEEIDTLL-PNKELATYDTLVKMEYLDMVVNETLRL-YPIAGRLERVCKKDVDINGTFIPKGTIVMMPTYALHRDPQHWTE---PDEFRPERFSKKNKDNINPYIYHPFGAGPRNCLGMRFALMNIKLALVRLMQNF 461          
BLAST of CX047341 vs. ExPASy Swiss-Prot
Match: CP2E1_MOUSE (Cytochrome P450 2E1 OS=Mus musculus GN=Cyp2e1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 36/115 (31.30%), Postives = 59/115 (51.30%), Query Frame = -3
Query:  514 EINEDNVLYIVENINV-------AAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKIL 837
            E +    +Y +ENI+V       A  ETT  ++ +G+  L+ +PEI++KL  E+D V+GP       D   +PY+ AV+ E  R    +P  +PH    D    GY +P  + ++
Sbjct:  276 EKHSQEPMYTMENISVTLADLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDRVIGPSRAPAVRDRMNMPYMDAVVHEIQRFINLVPSNLPHEATRDTVFRGYVIPKGTVVI 390          
BLAST of CX047341 vs. ExPASy Swiss-Prot
Match: CP2E1_CANFA (Cytochrome P450 2E1 OS=Canis familiaris GN=CYP2E1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 32/104 (30.77%), Postives = 57/104 (54.81%), Query Frame = -3
Query:  514 DNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKIL 825
            DN+   V ++  A  ETT  ++ +G+  L+ +PE+++KL  E+D V+GP       D  ++PY+ AV+ E  R    +P  +PH+   D    GY +P  + ++
Sbjct:  287 DNIAVTVADLFFAGTETTSTTLRYGLLILMKYPEVEEKLHEEIDRVIGPSRVPAIKDRLEMPYMDAVVHEIQRFIDLLPSNLPHVANQDTMFRGYVIPKGTVVI 390          
BLAST of CX047341 vs. ExPASy Swiss-Prot
Match: CP2AB_RABIT (Cytochrome P450 2A11 OS=Oryctolagus cuniculus GN=CYP2A11 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 45/197 (22.84%), Postives = 81/197 (41.12%), Query Frame = -3
Query:  253 KGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXESKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXGRLVQNFELLPPPGQSKIDTAEK 843
            K E +  N++    N+  A  ET   ++ +G   L+ HP+++ K+  E+D V+G   Q    D  K+PY +AVI E  R    IP+ +      D K   + +P  +++      +  +P  + K            + + + +     ++PF VG+R C                ++QNF          ID + K
Sbjct:  283 KSEFHMKNLVLTTLNLFFAGTETVSTTMRYGFLLLMKHPDVEAKVHEEIDRVIGRNRQPKFEDRAKMPYTEAVIHEIQRFTDMIPMGLARRVTRDTKFRDFLLPKGTEVFPMLGSVLKDPKFFSKPREFYPQHFLDEKGQFKKSD---AFMPFSVGKRYCLGEGLARMELFLFFTTIMQNFRFRSQQAPQDIDVSPK 476          
BLAST of CX047341 vs. ExPASy Swiss-Prot
Match: CP10_LYMST (Cytochrome P450 10 OS=Lymnaea stagnalis GN=CYP10 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 48/184 (26.09%), Postives = 85/184 (46.20%), Query Frame = -3
Query:  295 GEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGH-QITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQW-KKXXXXXXXXXXXXESKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXGRLVQNFEL 840
            G ++   V  ++ ++ +AA+ETT  +  W +  L  +P++Q+KL  E+       +  I+  D  KLP ++AV+KETLRL   I          D +LGGY +PA + +  N + +  +P+ + +              S+++A       L +G G R C               +++QNF L
Sbjct:  334 GSMSTKEVTGLIVDLMLAAVETTSSATVWCLYNLAKNPQVQEKLFQEITEAQAKNNGTISAEDLCKLPMVKAVVKETLRL-YPITYSTSRNIAEDMELGGYTIPAGTHVQANLYGMYRDPSLFPEPEGILPERWLRMNGSQMDATIKSTSQLVWGHGARMCLGRRIAEQEMHITLSKIIQNFTL 516          
BLAST of CX047341 vs. ExPASy Swiss-Prot
Match: C13A7_CAEEL (Putative cytochrome P450 CYP13A7 OS=Caenorhabditis elegans GN=cyp-13A7 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = -3
Query:  364 VAAIETTLWSIEWGIAELVNHPEIQKKLRNELDTVLGPGHQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXESKV-EANGNDFRYLPFGVGRRSC 792
            +A  +TT  S+ +    L  HPEIQKKL+ E+D    P  ++T     KL YL+ V+KE LRL     L+     L    + G ++ A + I V+ W L ++P  W                ++  A G    YLPFG+G R C
Sbjct:  325 LAGYDTTALSLSYSSYLLATHPEIQKKLQEEVDREC-PDPEVTFDQLSKLKYLECVVKEALRLYPLASLVHNRKCLKTTNVLGMEIEAGTNINVDTWSLHHDPKVWGDDVNEFKPERWESGDELFFAKGG---YLPFGMGPRIC 464          
The following BLAST results are available for this feature:
BLAST of CX047341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 338
Match NameE-valueIdentityDescription
CP4AA_RAT9.739e-1126.51Cytochrome P450 4A10 OS=Rattus norvegicus GN=Cyp4a... [more]
CP3A9_RAT9.739e-1127.87Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9... [more]
CP3A6_RABIT9.739e-1127.32Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CY... [more]
CP2E1_MOUSE9.739e-1131.30Cytochrome P450 2E1 OS=Mus musculus GN=Cyp2e1 PE=1... [more]
CP2E1_CANFA9.739e-1130.77Cytochrome P450 2E1 OS=Canis familiaris GN=CYP2E1 ... [more]
CP2AB_RABIT9.739e-1122.84Cytochrome P450 2A11 OS=Oryctolagus cuniculus GN=C... [more]
CP10_LYMST9.739e-1126.09Cytochrome P450 10 OS=Lymnaea stagnalis GN=CYP10 P... [more]
C13A7_CAEEL9.739e-1132.64Putative cytochrome P450 CYP13A7 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13E12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13E12-I24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047341 ID=CX047341; Name=CX047341; organism=Citrus sinensis; type=EST; length=899bp
TTTTTTTTAAGAAACAAAACATAAAACTTATTGCAAATCTTAAATGAAGA
TTTGAAGATTTAAGTTCACAAATTTACACAAGTATTATATAACTAGCCAA
CTGCCACTTGATTTGATCCGACATTGAAGAAACCATTCAACCACTTTGAA
ACAGACTTAACATTACAACCAAATGGAATTGTGAAACTAGAATGATCTAG
GCTTGGCAACAATGGTCGAGTGCTTCAAAATGTGCAAACTGAACTGCCCA
CCTTTCTCTGCAGTGTCAATCTTAGATTGACCTGGAGGAGGCAAGAGCTC
AAAGTTCTGTACCAAACGCCCAATAGTGATACCAAGAATTGGCAAAGCAA
GGATAATTCCAGGGCAGCTTCTTCTCCCAACACCGAAAGGAAGGTAACGG
AAGTCATTTCCATTAGCCTCAACCTTGGACTCCTCCTCCAAAAACCTCTC
AGGCCTGAATTCTTCAGGTTTCTTCCATTGGGCGGGATTGTTGGCGAGCC
ACCACGCGTTCACTAGGATTTTGCTCTCAGCAGGGACGTCGTAGCCTCCA
AGCTTGGCGTCGTGAAGGTTCATGTGCGGCACAAGAAGAGGAATTGCCAT
CCTAAGGCGAAGAGTTTCCTTGATCACGGCCTGAAGGTAGGGTAGTTTGT
GGGTGTCAGGCTCAGTGATTTGATGACCAGGACCAAGCACGGTGTCAAGT
TCATTGCGGAGCTTCTTCTGGATTTCAGGATGATTCACTAGCTCTGCAAT
TCCCCACTCGATCGACCAAAGAGTTGTCTCGATCGCGGCAACATTGATGT
TCTCAACGATGTATAGAACGTTGTCCTCGTTGATTTCTCCCTTTGTCTGA
GCGTCCAAAATATGATCGATTGCGCATTTCAAGCTTTCATTACTCATGC
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