CX047226

Overview
NameCX047226
Unique NameCX047226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047226 vs. ExPASy Swiss-Prot
Match: TCTP_SCHPO (Translationally-controlled tumor protein homolog OS=Schizosaccharomyces pombe GN=p23fy PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.075e-14
Identity = 52/156 (33.33%), Postives = 84/156 (53.85%), Query Frame = 3
Query:    3 DSFPYKEIENGILWEVEGKWV-VQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFLTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVK 458
            D++  KE+++ I++E + + V V+   DVDIGANPS                V ++V +FRL    +FDKK +++Y+K ++K +  +L E   ER  +F+KN  G  K +L+   D  F++GESM  D  +V   Y+E    P  ++  D L   K
Sbjct:   16 DAYDLKEVDD-IVYEADCQMVTVKQGGDVDIGANPSAEDAEENAEEGTET--VNNLVYSFRLSPT-SFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFFKDGLVSEK 167          
BLAST of CX047226 vs. ExPASy Swiss-Prot
Match: TCTP_RAT (Translationally-controlled tumor protein OS=Rattus norvegicus GN=Tpt1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.084e-14
Identity = 50/158 (31.65%), Postives = 79/158 (50.00%), Query Frame = 3
Query:    3 DSFPYKEIENGILWEVEGKWV--VQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFLTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 461
            D +  +EI +G+  EVEGK V   +GA+D  +    +                 VDIV    LQE  +F K+ +  Y+K ++K L  KL E++ E  K  + GA    K +L+  ++ QFF+GE+M+ DG +    Y+E    P  ++  D L+  KC
Sbjct:   16 DIYKIREIADGLCLEVEGKMVSRTEGAIDDSLIGGNASAEGPEGEGTESTVVTGVDIVMNHHLQET-SFTKEAYKKYIKDYMKSLKGKLEEQKPERVKPFMTGAAEQIKHILANFNNYQFFIGENMNPDGMVALLDYREDGVTPFMIFFKDGLEMEKC 172          
BLAST of CX047226 vs. ExPASy Swiss-Prot
Match: TCTP_MOUSE (Translationally-controlled tumor protein OS=Mus musculus GN=Tpt1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.084e-14
Identity = 50/158 (31.65%), Postives = 79/158 (50.00%), Query Frame = 3
Query:    3 DSFPYKEIENGILWEVEGKWV--VQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFLTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 461
            D +  +EI +G+  EVEGK V   +GA+D  +    +                 VDIV    LQE  +F K+ +  Y+K ++K L  KL E++ E  K  + GA    K +L+  ++ QFF+GE+M+ DG +    Y+E    P  ++  D L+  KC
Sbjct:   16 DIYKIREIADGLCLEVEGKMVSRTEGAIDDSLIGGNASAEGPEGEGTESTVVTGVDIVMNHHLQET-SFTKEAYKKYIKDYMKSLKGKLEEQKPERVKPFMTGAAEQIKHILANFNNYQFFIGENMNPDGMVALLDYREDGVTPFMIFFKDGLEMEKC 172          
BLAST of CX047226 vs. ExPASy Swiss-Prot
Match: TCTP_ANOGA (Translationally-controlled tumor protein homolog OS=Anopheles gambiae GN=Tctp PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.084e-14
Identity = 57/158 (36.08%), Postives = 80/158 (50.63%), Query Frame = 3
Query:    3 DSFPYKEIENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFLTYMKRFIKLLTPKLSEERQ---EIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYK--EGATDPTFLYMADALKEVK 458
            D++  K +++ +++EV GK V +   DV + GANPS                 VDIV   RL E    DKK F TY+K ++K L  +L E+     E+FK NI    K LL +  DLQFF GESM  +G +    Y+  +G + P  L     L+E K
Sbjct:   16 DTYKVKLVDD-VMYEVYGKHVSRTLGDVQLDGANPSAEEAEEGTESATESG--VDIVLNHRLVETGFSDKKQFTTYLKDYMKKLVTRLEEKSPGEVEVFKTNINKVMKDLLGRFKDLQFFTGESMDCEGLIAMLEYRDIDGESVPVLLCFKHGLEEEK 170          
BLAST of CX047226 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMX (Translationally-controlled tumor protein homolog OS=Psetta maxima GN=tpt1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.967e-14
Identity = 52/156 (33.33%), Postives = 75/156 (48.08%), Query Frame = 3
Query:    9 FPYKEIENGILWEVEGKWVVQGAV--DVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFLTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 461
            +  +E+E GIL EVEGK + +     D   GANPS                 VDI+   +L     ++KK +  Y+K+++K L  KL E   ER + F     GA K +L K  D +F+ GESM+ D  +    Y+E    P  L+  D L+  KC
Sbjct:   18 YKIRELEGGILLEVEGKRITRTEAIDDSAFGANPSAEELSEANEAAVSSG--VDIILNHKLIST-LYNKKQYSAYIKKYMKDLKTKLEETNPERVDAFVAGAVGAVKMILGKFKDFEFYTGESMNHDAMVGLLDYREDGITPIMLFFKDGLEIEKC 170          
BLAST of CX047226 vs. ExPASy Swiss-Prot
Match: TCTP_CANGA (Translationally-controlled tumor protein homolog OS=Candida glabrata GN=CAGL0L12870g PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.967e-14
Identity = 50/155 (32.26%), Postives = 77/155 (49.68%), Query Frame = 3
Query:    3 DSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFLTYMKRFIKLLTPKLSEERQEI---FKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVK 458
            D++   E++ G+++E +   V  G  ++DIGANPS                V ++V +FRLQ    FDKK FLTY+K ++K +  KL E+  +    F+K  +   K ++    D +FF GESM  D  +V   Y+E  T P        + E K
Sbjct:   16 DAYDINEVD-GVIYEADCAMVKVGGDNIDIGANPSTEDGEDDVEDGTEV--VNNVVHSFRLQPT-GFDKKSFLTYIKGYMKAVKAKLQEKNPDAIPTFEKGAQVYVKKVIGSFKDWEFFTGESMDPDAMVVMLNYREDGTTPFVAIWKHGIDEEK 166          
BLAST of CX047226 vs. ExPASy Swiss-Prot
Match: TCTP_YEAST (Translationally-controlled tumor protein homolog OS=Saccharomyces cerevisiae GN=TMA19 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.099e-14
Identity = 50/142 (35.21%), Postives = 75/142 (52.82%), Query Frame = 3
Query:    3 DSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFLTYMKRFIKLLTPKLSEERQE---IFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDP 419
            D++  K +++ +++E +   V  G  ++DIGANPS                V ++V +FRLQ Q AFDKK FLTY+K ++K +  KL E   E    F+K  +   K ++    D +FF GESM  D  +V   Y+E  T P
Sbjct:   16 DAYDAKLVDD-VIYEADCAMVNVGGDNIDIGANPSAEGGDDDVEEGAEM--VNNVVHSFRLQ-QTAFDKKSFLTYIKGYMKAVKAKLQETNPEEVPKFEKGAQTYVKKVIGSFKDWEFFTGESMDPDAMVVMLNYREDGTTP 153          
BLAST of CX047226 vs. ExPASy Swiss-Prot
Match: TCTP_PIG (Translationally-controlled tumor protein OS=Sus scrofa GN=TPT1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.188e-13
Identity = 52/159 (32.70%), Postives = 79/159 (49.69%), Query Frame = 3
Query:    3 DSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFLTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 461
            D +  +EI +G+  EVEGK V +   ++D   IG N S                V DIV    LQE  +F K+ +  Y+K ++K +  KL E+R E  K  + GA    K +L+   + QFF+GE+M+ DG +    Y+E    P  ++  D L+  KC
Sbjct:   16 DIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172          
BLAST of CX047226 vs. ExPASy Swiss-Prot
Match: TCTP_PANTR (Translationally-controlled tumor protein OS=Pan troglodytes GN=TPT1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.188e-13
Identity = 52/159 (32.70%), Postives = 79/159 (49.69%), Query Frame = 3
Query:    3 DSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFLTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 461
            D +  +EI +G+  EVEGK V +   ++D   IG N S                V DIV    LQE  +F K+ +  Y+K ++K +  KL E+R E  K  + GA    K +L+   + QFF+GE+M+ DG +    Y+E    P  ++  D L+  KC
Sbjct:   16 DIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172          
BLAST of CX047226 vs. ExPASy Swiss-Prot
Match: TCTP_HUMAN (Translationally-controlled tumor protein OS=Homo sapiens GN=TPT1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.188e-13
Identity = 52/159 (32.70%), Postives = 79/159 (49.69%), Query Frame = 3
Query:    3 DSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFLTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 461
            D +  +EI +G+  EVEGK V +   ++D   IG N S                V DIV    LQE  +F K+ +  Y+K ++K +  KL E+R E  K  + GA    K +L+   + QFF+GE+M+ DG +    Y+E    P  ++  D L+  KC
Sbjct:   16 DIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172          
The following BLAST results are available for this feature:
BLAST of CX047226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
TCTP_SCHPO1.075e-1433.33Translationally-controlled tumor protein homolog O... [more]
TCTP_RAT4.084e-1431.65Translationally-controlled tumor protein OS=Rattus... [more]
TCTP_MOUSE4.084e-1431.65Translationally-controlled tumor protein OS=Mus mu... [more]
TCTP_ANOGA4.084e-1436.08Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMX6.967e-1433.33Translationally-controlled tumor protein homolog O... [more]
TCTP_CANGA6.967e-1432.26Translationally-controlled tumor protein homolog O... [more]
TCTP_YEAST9.099e-1435.21Translationally-controlled tumor protein homolog O... [more]
TCTP_PIG1.188e-1332.70Translationally-controlled tumor protein OS=Sus sc... [more]
TCTP_PANTR1.188e-1332.70Translationally-controlled tumor protein OS=Pan tr... [more]
TCTP_HUMAN1.188e-1332.70Translationally-controlled tumor protein OS=Homo s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12H06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12H06-O11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047226 ID=CX047226; Name=CX047226; organism=Citrus sinensis; type=EST; length=646bp
CCGATTCTTTTCCCTACAAGGAAATTGAGAATGGGATTCTGTGGGAAGTT
GAGGGAAAGTGGGTTGTACAAGGAGCCGTTGATGTTGACATTGGTGCAAA
TCCTTCTGCCGAAGGAGCTGATGAGGATGAGGGTGTTGATGACCAAGCCG
TGAAGGTGGTTGACATTGTCGACACATTCAGGCTACAGGAGCAACCCGCT
TTTGACAAGAAGCCGTTTTTAACATACATGAAGAGATTCATCAAGTTGCT
GACGCCCAAGCTGAGTGAGGAGAGGCAGGAGATATTTAAGAAGAATATTG
AGGGAGCGACCAAGTTCTTGCTCTCGAAGCTCAGTGACCTTCAATTCTTT
GTTGGGGAGAGCATGCATGATGATGGCTGTCTTGTCTTTGCTTACTACAA
GGAAGGTGCGACCGACCCAACATTTTTGTATATGGCTGATGCATTGAAGG
AGGTGAAGTGCTAAGCTGGGCTTCGAAGAGGAAGTGCCTGCTGTAGTTCT
AATTTTAATTATTGCCCGCGGTTATTTTTATGTATCTTTTGTGCTGGTTT
ACTCGGGACTTGTGCTTGCTGTTTTTTAGTTTTTATTTTGACATAAACAA
TATGTTTTTCTGCTCTTAATTATTGGGTTTTATGGTTTGAGATTGA
back to top