CX047198

Overview
NameCX047198
Unique NameCX047198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STRPZ (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 35/113 (30.97%), Postives = 54/113 (47.79%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+RK  + GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STRPM (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M28 GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 35/113 (30.97%), Postives = 54/113 (47.79%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+RK  + GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STRPG (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 35/113 (30.97%), Postives = 54/113 (47.79%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+RK  + GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STRPC (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 35/113 (30.97%), Postives = 54/113 (47.79%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+RK  + GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STRPB (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 35/113 (30.97%), Postives = 54/113 (47.79%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+RK  + GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STRP8 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M18 GN=tpiA PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 35/113 (30.97%), Postives = 54/113 (47.79%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+RK  + GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STRP3 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M3 GN=tpiA PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 35/113 (30.97%), Postives = 54/113 (47.79%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+RK  + GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STRP1 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M1 GN=tpiA PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 35/113 (30.97%), Postives = 54/113 (47.79%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+RK  + GNWK N   +E K  V  +                        +++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPH (Triosephosphate isomerase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 37/111 (33.33%), Postives = 53/111 (47.75%), Query Frame = -2
Query:   17 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 349
            R+  V GNWK NG  ++V ++VS + E                         L      V AQN + +  GA+TGE+SA ML +    +V++GHSERR   +E  +FV  K
Sbjct:    2 RQKIVAGNWKMNGQIQQVTELVSQIEELIGFDCAAQVAVMPPSIYIPKVRDCLRTGKIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQK 112          
The following BLAST results are available for this feature:
BLAST of CX047198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TPIS_STRPZ9.817e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRPM9.817e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRPG9.817e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRPC9.817e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRPB9.817e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRP89.817e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRP39.817e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRP19.817e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_LEGPH9.817e-1133.33Triosephosphate isomerase OS=Legionella pneumophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12G02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G02-M3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047198 ID=CX047198; Name=CX047198; organism=Citrus sinensis; type=EST; length=386bp
AAAGTGCATAAGCAACTTTATCTCCAACAAAATCATTTGACTCATTCAAA
AGAGCTCTTCTTTCAGAATGACCAAGAATGACCCAAGGAATGCTCAAGTT
GACAAGCATCTCAGCACTAACTTCCCCGGTAAAAGCACCACCTTTGCGAA
CCCAGCAATTTTGAGCGGCAACATGGAAATCAGACCGCAACAGACTCTTG
ACCAAAGGAAGAAACACAAACGGAGGGCTTACAACAACCTCCACAACATC
CTCAGAAGGAACTTCAGCTTCATTCAATGTAGAAACAATCTTCTTCACTT
CCTCAGATGTCCCATTGCATTTCCAGTTGCCGCCGACGAAGAATTTGCGG
GCCATGACGACGATTGAATTTTGTTTGGTTTGGCCT
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