CX047198

Overview
NameCX047198
Unique NameCX047198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.157e-19
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = -2
Query:    2 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 352
            +RKFFVGGNWK NG    + ++++TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +L   WV+LGHSERR +  ES++ +G KVA+AL
Sbjct:    4 SRKFFVGGNWKMNGRKNNLGELINTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.511e-19
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = -2
Query:    2 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 352
            +RKFFVGGNWK NG  + + ++++TLN  +                     K  L + F V+AQNC+    GAFTGE+S  M+ +    WVILGHSERR +  ES++ +G KVA+AL
Sbjct:    3 SRKFFVGGNWKMNGDKKSLTELINTLNSGKISADTEVVCGAPTIYLDFARQK--LDAKFAVSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGESDELIGQKVAHAL 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 94.7449 bits (234), Expect = 1.511e-19
Identity = 50/117 (42.74%), Postives = 66/117 (56.41%), Query Frame = -2
Query:    2 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 352
            ARKFFVGGNWK NG    + ++++TLN A+                     K  L     VAAQNC+    GAFTGE+   M+ +L   WV+LGHSERR +  ES++ +G KVA+AL
Sbjct:    4 ARKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVANGAFTGEIGPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.511e-19
Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = -2
Query:    2 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349
            RKFFVGGNWK NG  + + +++ TLN A+                    +K  +   F VAAQNC+    GAFTGE+S  M+ +  + WVILGHSERR +  ES++ +G KV++AL
Sbjct:    3 RKFFVGGNWKMNGDKKSLGELIQTLNAAKVPFTGEIVCAPPEAYLDFARLK--VDPKFGVAAQNCYKVSKGAFTGEISPAMIKDCGVTWVILGHSERRHVFGESDELIGQKVSHAL 116          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.511e-19
Identity = 51/117 (43.59%), Postives = 66/117 (56.41%), Query Frame = -2
Query:    2 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 352
            +RKFFVGGNWK NG  E + +++ TLN A                      +S L     VAAQNC+    GAFTGE+S  M+ +  I WVILGHSERR +  ES++ +G KVA+ L
Sbjct:    3 SRKFFVGGNWKMNGDKESLGELIMTLNTASLNDETDVVCGAPSIYLDYA--RSKLDQRIGVAAQNCYKVPKGAFTGEISPAMIKDCGIDWVILGHSERRHVFGESDELIGQKVAHCL 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 1.974e-19
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = -2
Query:    2 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 352
            +RKFFVGGNWK NG  + + ++++TLN A+                     K  L +   VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL
Sbjct:    4 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQK--LDAKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_CHICK (Triosephosphate isomerase OS=Gallus gallus GN=TPI1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.577e-19
Identity = 50/116 (43.10%), Postives = 67/116 (57.76%), Query Frame = -2
Query:    2 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349
            RKFFVGGNWK NG  + + +++ TLN A+                     K  L +   VAAQNC+    GAFTGE+S  M+ ++   WVILGHSERR +  ES++ +G KVA+AL
Sbjct:    4 RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQK--LDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHAL 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.366e-19
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = -2
Query:    2 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 352
            +RKFFVGGNWK NG  + + ++++TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL
Sbjct:    3 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHAL 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.366e-19
Identity = 49/117 (41.88%), Postives = 66/117 (56.41%), Query Frame = -2
Query:    2 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 352
            +RKFFVGGNWK NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL
Sbjct:    4 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDYGATWVVLGHSERRHVFGESDELIGQKVAHAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_PANTR (Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.366e-19
Identity = 49/117 (41.88%), Postives = 66/117 (56.41%), Query Frame = -2
Query:    2 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 352
            +RKFFVGGNWK NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL
Sbjct:    4 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHAL 118          
The following BLAST results are available for this feature:
BLAST of CX047198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TPIS_BOVIN1.157e-1942.74Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_XENTR1.511e-1941.88Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_PIG1.511e-1942.74Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPIS_LATCH1.511e-1942.24Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPISA_DANRE1.511e-1943.59Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPIS_CANFA1.974e-1941.88Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPIS_CHICK2.577e-1943.10Triosephosphate isomerase OS=Gallus gallus GN=TPI1... [more]
TPIS_RABIT3.366e-1941.88Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPIS_PONAB3.366e-1941.88Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]
TPIS_PANTR3.366e-1941.88Triosephosphate isomerase OS=Pan troglodytes GN=TP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12G02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G02-M3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047198 ID=CX047198; Name=CX047198; organism=Citrus sinensis; type=EST; length=386bp
AAAGTGCATAAGCAACTTTATCTCCAACAAAATCATTTGACTCATTCAAA
AGAGCTCTTCTTTCAGAATGACCAAGAATGACCCAAGGAATGCTCAAGTT
GACAAGCATCTCAGCACTAACTTCCCCGGTAAAAGCACCACCTTTGCGAA
CCCAGCAATTTTGAGCGGCAACATGGAAATCAGACCGCAACAGACTCTTG
ACCAAAGGAAGAAACACAAACGGAGGGCTTACAACAACCTCCACAACATC
CTCAGAAGGAACTTCAGCTTCATTCAATGTAGAAACAATCTTCTTCACTT
CCTCAGATGTCCCATTGCATTTCCAGTTGCCGCCGACGAAGAATTTGCGG
GCCATGACGACGATTGAATTTTGTTTGGTTTGGCCT
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