CX047198

Overview
NameCX047198
Unique NameCX047198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            M+RKF VGGNWK NG  + + +I  TL+ A                      ++LL  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL
Sbjct:    1 MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHAL 116          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            M+RKF VGGNWK NG  + + +I  TL+ A                      ++LL  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL
Sbjct:    1 MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHAL 116          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.667e-16
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            MAR FF+GGN+K NG+   +K+IV  LN A                       +  R +  ++AQN + +  GA+TGE S E + ++   WVILGHSERR   NE+++ V +K  +AL
Sbjct:    1 MARTFFIGGNFKMNGSKASIKEIVDRLNGASIPSNVEVVIAPPAIYLDHAVALNK-RKEVKISAQNAYSKASGAYTGENSVEQIKDVGAEWVILGHSERRTYFNETDEIVAEKTKFAL 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            M RKFFVGGN+K NGT++ +  I++ LN A+                     + L      V+AQN + +  GAFTGE+S E L +  I W + GHSERR LL E ++FV  K   A+
Sbjct:    1 MPRKFFVGGNFKMNGTAKSITHIITNLNSAKLDPSTEIVIAPPAIYLVLA--RQLANGQVAVSAQNVFDKPNGAFTGELSVEQLRDEKITWTLAGHSERRVLLREDDEFVARKTKAAI 116          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            MAR FFVGGN+K NG+ + +K+IV  LN A+                       +      V AQN + +  GA+TGE S + + ++   WVILGHSERR   NE ++ V +K A+AL
Sbjct:    1 MARTFFVGGNFKLNGSKQSIKEIVERLNTADLADNVEVVICPPATYLDHAV-SLVSHPQVTVGAQNAYTKASGAYTGENSVDQIKDVGAKWVILGHSERRTYFNEDDEQVAEKTAFAL 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_CANAL (Triosephosphate isomerase OS=Candida albicans GN=TPI1 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.550e-16
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            MAR+FFVGGN+K NGT +++  I+  LN+A+                     ++  +    + AQN + +  GAFTGE  A  ++++   W + GHSERR ++ ES++F+ +K  +AL
Sbjct:    1 MARQFFVGGNFKANGTKQQITSIIDNLNKADLPKDVEVVICPPALYLGLAVEQNK-QPTVAIGAQNVFDKSCGAFTGETCASQILDVGASWTLTGHSERRTIIKESDEFIAEKTKFAL 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.949e-15
Identity = 47/119 (39.50%), Postives = 64/119 (53.78%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTS-EEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            M R FFVGGNWK N TS    K +V  LN+A+                     + +      VAAQN + ++ GAFTGE+S + + +  IP+VILGHSERR L +E+++ V  K   AL
Sbjct:    1 MTRSFFVGGNWKLNPTSLSAAKALVEALNKADLDPSTEVVVAPPALYLLPI--QEIAGKAVKVAAQNAYFKESGAFTGEISPKQISDAGIPYVILGHSERRTLFHETSEVVALKTRAAL 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_PLAFA (Triosephosphate isomerase OS=Plasmodium falciparum GN=TPI PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.852e-15
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            MARK+FV  NWKCNGT E +K + ++ N  +                     K LL+S F    QN      G++TGEVSAE+  +L+I +VI+GH ERR   +E+++ V +K+  +L
Sbjct:    1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRK-LLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASL 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.852e-15
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            MARK+FV  NWKCNGT E +K + ++ N  +                     K LL+S F    QN      G++TGEVSAE+  +L+I +VI+GH ERR   +E+++ V +K+  +L
Sbjct:    1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRK-LLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASL 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.852e-15
Identity = 44/118 (37.29%), Postives = 60/118 (50.85%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            MAR FFVGGN+K NGT + +K+IV  LN A                        + +    V  QN + +  GA+TGE S + L ++   WVILGHSERR   +E +  V +K  +AL
Sbjct:    1 MARTFFVGGNFKLNGTKKSIKEIVDRLNTASLPENVEVVICPPATYLDYTV-SLVSKKQVTVGGQNTYTKASGAYTGENSVDQLKDVGAKWVILGHSERRTYFHEDDKIVAEKTKFAL 117          
The following BLAST results are available for this feature:
BLAST of CX047198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TPIS_DROSI1.197e-1638.98Triosephosphate isomerase OS=Drosophila simulans G... [more]
TPIS_DROME1.197e-1638.98Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_KLULA2.667e-1637.29Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_PARBA3.484e-1638.98Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_ASHGO3.484e-1638.14Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPIS_CANAL4.550e-1633.90Triosephosphate isomerase OS=Candida albicans GN=T... [more]
TPIS_COPC72.949e-1539.50Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_PLAFA3.852e-1537.29Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_PLAF73.852e-1537.29Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_CANGA3.852e-1537.29Triosephosphate isomerase OS=Candida glabrata GN=T... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12G02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G02-M3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047198 ID=CX047198; Name=CX047198; organism=Citrus sinensis; type=EST; length=386bp
AAAGTGCATAAGCAACTTTATCTCCAACAAAATCATTTGACTCATTCAAA
AGAGCTCTTCTTTCAGAATGACCAAGAATGACCCAAGGAATGCTCAAGTT
GACAAGCATCTCAGCACTAACTTCCCCGGTAAAAGCACCACCTTTGCGAA
CCCAGCAATTTTGAGCGGCAACATGGAAATCAGACCGCAACAGACTCTTG
ACCAAAGGAAGAAACACAAACGGAGGGCTTACAACAACCTCCACAACATC
CTCAGAAGGAACTTCAGCTTCATTCAATGTAGAAACAATCTTCTTCACTT
CCTCAGATGTCCCATTGCATTTCCAGTTGCCGCCGACGAAGAATTTGCGG
GCCATGACGACGATTGAATTTTGTTTGGTTTGGCCT
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