CX047198

Overview
NameCX047198
Unique NameCX047198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.258e-14
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = -2
Query:    2 KSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 199
            +S L     VAAQNC+    GAFTGE+S  ML +L+I WVILGHSERRA+  ES++ + DKVA+AL
Sbjct:   33 RSQLPDSVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHAL 98          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 42/108 (38.89%), Postives = 57/108 (52.78%), Query Frame = -2
Query:    5 NWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYA 328
            NWKCNG+   +  ++ TLN A                      + L    F +AAQN  + + GAFTGEVS ++L +  I WV+LGHSERR    E+N+ V +KVA A
Sbjct:   12 NWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKAR-LTNPKFQIAAQNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQA 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 40/109 (36.70%), Postives = 57/109 (52.29%), Query Frame = -2
Query:    2 NWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 328
            NWKCNG+ + + +++   N                        + L    F +AAQN  + K GAFTGEVS  +L +  + W++LGHSERRA   E+N+ V DKVA A+
Sbjct:   11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKER-LSHPKFVIAAQNA-IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAV 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_PELCD (Triosephosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 44/112 (39.29%), Postives = 58/112 (51.79%), Query Frame = -2
Query:   14 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKV 349
            R+ F+ GNWK + TS E   +V  L  A                     + +L +SD  VAAQNC+    GAFTGEVS  +L +    +VI+GHSERR L  ES+ F+  KV
Sbjct:    2 RRPFIAGNWKLHKTSAEAAALVGELKGALSDVVDRDIVVAPVFTSLAAVIATLEKSDISVAAQNCYPENQGAFTGEVSPALLKDAGCRYVIVGHSERRQLFAESDAFINRKV 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.239e-13
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = -2
Query:    2 KSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 199
            +SLL     VAAQNC+    GAFTGE+S  ML +L + WVILGHSERRA+  E+++ + +KVA+AL
Sbjct:   33 RSLLPETIGVAAQNCYKVAKGAFTGEISPAMLKDLGLGWVILGHSERRAIFGETDELIAEKVAHAL 98          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.113e-13
Identity = 41/105 (39.05%), Postives = 55/105 (52.38%), Query Frame = -2
Query:    2 NGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 316
            NG  ++V  IV TL +                       +S++     VAAQNCW    GAFTGE+S  M+ ++   WVILGHSERR +  E +D V +KVA+AL
Sbjct:    2 NGDKKQVTDIVETLKKGPLDPNVEVVIGVPAIYLAYV--QSIVPGTISVAAQNCWKVAKGAFTGEISPAMIKDIGANWVILGHSERRTIFGEKDDLVAEKVAHAL 104          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_HAES2 (Triosephosphate isomerase OS=Haemophilus somnus (strain 2336) GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 39/113 (34.51%), Postives = 60/113 (53.10%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            MAR+  V GNWK NG+    K++++ L +                        +L+ SD  +  QN  + K GAFTG++S EML +  + +VI+GHSERR   +ES++F+  K
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELITGLKDELNAVSGCDVAIAPPVMYLAEAEAALVSSDIALGTQNVDLNKQGAFTGDISTEMLKDFGVKYVIIGHSERRQYHHESDEFIAKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_HAES1 (Triosephosphate isomerase OS=Haemophilus somnus (strain 129Pt) GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 39/113 (34.51%), Postives = 60/113 (53.10%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            MAR+  V GNWK NG+    K++++ L +                        +L+ SD  +  QN  + K GAFTG++S EML +  + +VI+GHSERR   +ES++F+  K
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELITGLKDELNAVSGCDVAIAPPVMYLAEAETALVSSDIALGTQNVDLNKQGAFTGDISTEMLKDFGVKYVIIGHSERRQYHHESDEFIAKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = -2
Query:    2 KSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 199
            +S L     VAAQNC+    GAFTGE+S  ML +L+I WVILGHSERRA+  ES + + DK+ +AL
Sbjct:   33 RSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESGELIADKIVHAL 98          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = -2
Query:    5 NWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYA 328
            NWKCNGT+  ++K+V   NE                       K  LR+  +V +    + K GAFTGEVS  +L ++ + WVILGHSERR    E+++ V  KV+ A
Sbjct:   12 NWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAK--LRNPKYVISAENAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEA 117          
The following BLAST results are available for this feature:
BLAST of CX047198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TPIS_AEDTO4.258e-1457.58Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_TRYCR5.562e-1438.89Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_TRYBB5.562e-1436.70Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_PELCD5.562e-1439.29Triosephosphate isomerase OS=Pelobacter carbinolic... [more]
TPIS_ANOME1.239e-1354.55Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_HELVI2.113e-1339.05Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_HAES22.760e-1334.51Triosephosphate isomerase OS=Haemophilus somnus (s... [more]
TPIS_HAES12.760e-1334.51Triosephosphate isomerase OS=Haemophilus somnus (s... [more]
TPIS_CULPI2.760e-1354.55Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_LEIME4.708e-1337.04Triosephosphate isomerase OS=Leishmania mexicana P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12G02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G02-M3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047198 ID=CX047198; Name=CX047198; organism=Citrus sinensis; type=EST; length=386bp
AAAGTGCATAAGCAACTTTATCTCCAACAAAATCATTTGACTCATTCAAA
AGAGCTCTTCTTTCAGAATGACCAAGAATGACCCAAGGAATGCTCAAGTT
GACAAGCATCTCAGCACTAACTTCCCCGGTAAAAGCACCACCTTTGCGAA
CCCAGCAATTTTGAGCGGCAACATGGAAATCAGACCGCAACAGACTCTTG
ACCAAAGGAAGAAACACAAACGGAGGGCTTACAACAACCTCCACAACATC
CTCAGAAGGAACTTCAGCTTCATTCAATGTAGAAACAATCTTCTTCACTT
CCTCAGATGTCCCATTGCATTTCCAGTTGCCGCCGACGAAGAATTTGCGG
GCCATGACGACGATTGAATTTTGTTTGGTTTGGCCT
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