CX047198
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_CYTH3 (Triosephosphate isomerase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=tpiA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.370e-12 Identity = 41/117 (35.04%), Postives = 60/117 (51.28%), Query Frame = -2 Query: 2 RKFFVGGNWKCNGTSEEVKKIVSTL-NEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349 RK + GNWK N T EE + S + N A+ V ++ + AQN + ++ GAFTGE+SA ML ++ + +VI+GHSERR E+N + DKV +L Sbjct: 2 RKKVIAGNWKMNKTLEEGLSLASEVANMAKDEVPADVNLVMCIPYISLAAVSKVINDKVAIGAQNVYQKESGAFTGEISAPMLKSVGVKYVIIGHSERREYFGETNQQLADKVTISL 118
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_ALKOO (Triosephosphate isomerase OS=Alkaliphilus oremlandii (strain OhILAs) GN=tpiA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.370e-12 Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = -2 Query: 2 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349 RK + GNWK N S+E +V+ + + E K+L+ ++ + AQN + GA+TGE+SA ML ++ + +VILGHSERR NE+++ V KV A+ Sbjct: 2 RKPIIAGNWKMNKVSKEALDLVNQIKD-EVHKTEVEVVVCCPFTVLSQVQKALVGTNLKLGAQNMHWEEDGAYTGEISANMLKDIGVEYVILGHSERRQYFNETDETVNKKVKKAI 116
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.789e-12 Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = -2 Query: 5 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYA 349 R+ + GNWK NGT++ + + + + V+ ++ S + AQN V GAFTGE+S EML ++ +VILGHSERR L E+N+ V KVA A Sbjct: 2 RRALIAGNWKLNGTTQAATALATAVRDGVAANKPDCDVLVCPTFTVLSAVQGVVAGSGVDLGAQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASA 117
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_FINM2 (Triosephosphate isomerase OS=Finegoldia magna (strain ATCC 29328) GN=tpiA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.789e-12 Identity = 41/116 (35.34%), Postives = 58/116 (50.00%), Query Frame = -2 Query: 2 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349 RK + GNWK N T E K+ ++ L + + L S+ AQN + + GAFTGEVS ML +L I +VI+GHSERR + E ++ + K+A AL Sbjct: 2 RKPLIAGNWKMNKTDGETKQFINDLKCLDISDNVEACIISPFTSLKTLT-EDLRNSNISTGAQNMYYEECGAFTGEVSPNMLKDLGIDYVIIGHSERRTIFKEDDELLNKKIASAL 116
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_COLP3 (Triosephosphate isomerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tpiA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.789e-12 Identity = 46/121 (38.02%), Postives = 60/121 (49.59%), Query Frame = -2 Query: 2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVK---SLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355 M R+ V NWK NG S V +VS L + E K + L HV +QN + GA+TGEVS ML NL+I +VI+GHSERR++ E++ V KV AL Sbjct: 1 MTRQAIVAANWKMNGDSALVDTMVSGLADIELSSHVDVVICPSFPYLSELNQKIKAANLNEAIHVGSQNVSEHESGAYTGEVSTAMLQNLAINYVIVGHSERRSIFKETSTQVAKKVHAAL 121
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBA (Triosephosphate isomerase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=tpiA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.337e-12 Identity = 43/115 (37.39%), Postives = 56/115 (48.70%), Query Frame = -2 Query: 5 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYA 349 RK + GNWK N T +E K+V L K+ S+ VAAQN + GAFTGEVS ML + I +V+LGHSERR NE+++ + KV A Sbjct: 2 RKAIIAGNWKMNKTVDEAVKVVEELKPL-VKDATCDVVVCPTFVCLDAVKKATAGSNIKVAAQNMHFEESGAFTGEVSPGMLEAMGIEYVVLGHSERREYFNETDEAINKKVKAA 115
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_HAHCH (Triosephosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=tpiA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.052e-12 Identity = 40/116 (34.48%), Postives = 60/116 (51.72%), Query Frame = -2 Query: 2 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349 RK + GNWK NG+ E K ++ + A+ ++ S + +QNC + GA+TGEVSA+M ++ WVILGHSERRAL E+++ + KV A+ Sbjct: 2 RKKLIAGNWKSNGSLERNKALLEGIVNAKALGSVDVVVCPPFPYLQSVE-SAVSDSMIELGSQNCSATEDGAYTGEVSAKMCADMKCSWVILGHSERRALYAENDEVIACKVKRAV 116
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STRGC (Triosephosphate isomerase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tpiA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12 Identity = 37/113 (32.74%), Postives = 55/113 (48.67%), Query Frame = -2 Query: 17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355 M+RK F+ GNWK N EE K V + + + S+ VAAQNC+ GAFTGE S ++L + +V++GHSERR +E+++ + K Sbjct: 1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPAVDLTAVLAAAKGSNLKVAAQNCYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKK 113
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_FLAJ1 (Triosephosphate isomerase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tpiA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12 Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = -2 Query: 2 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349 RK V GNWK + + + +++++ L L + V+AQN +GGAFTGE+SA+ML ++ + VILGHSERRA+ +E++ + +KV AL Sbjct: 2 RKSIVAGNWKMHKNAAQTEELLNELIAKIPAKTNAQVIVAPTFVNLQAAAAKLKNTTIGVSAQNVHQAEGGAFTGEISADMLTSIGVNTVILGHSERRAIFHETDALIANKVDTAL 117
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBB (Triosephosphate isomerase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=tpiA PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.205e-12 Identity = 42/115 (36.52%), Postives = 56/115 (48.70%), Query Frame = -2 Query: 5 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYA 349 RK + GNWK N T +E K+V L K+ S+ VAAQN + GAFTGEV+ ML + I +V+LGHSERR NE+++ + KV A Sbjct: 2 RKAIIAGNWKMNKTVDEAVKVVEELKPL-VKDATCDVVVCPTFVCLDAVKKATAGSNIKVAAQNMHFEESGAFTGEVAPGMLEAMGIEYVVLGHSERREYFNETDEAINKKVKAA 115 The following BLAST results are available for this feature:
BLAST of CX047198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 129
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX047198 ID=CX047198; Name=CX047198; organism=Citrus sinensis; type=EST; length=386bpback to top |