CX047198

Overview
NameCX047198
Unique NameCX047198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.879e-12
Identity = 38/117 (32.48%), Postives = 63/117 (53.85%), Query Frame = -2
Query:    2 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 352
            AR+ F+GGN+KCNG+ + +K  V+++   +                      +  +    +AAQN ++   GA+TGE S EML+++ +  VI+GHSERR ++ E+N+    K   AL
Sbjct:    3 ARRPFIGGNFKCNGSLDFIKSHVASIASYKIPESVDVVVAPSFVHLSTAIAANTSKC-LKIAAQNVYLEGNGAWTGETSVEMLLDMGLSHVIIGHSERRRIMGETNEQSAKKAKRAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_PSEHT (Triosephosphate isomerase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.515e-11
Identity = 40/116 (34.48%), Postives = 56/116 (48.28%), Query Frame = -2
Query:    5 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYA 352
            ARK  V GNWK NG+ E VK++   +N  +                      +++ S      Q       GAFTGEV A+++  L   +V++GHSERR++  ESND V  K A A
Sbjct:    3 ARKAMVAGNWKMNGSLELVKQMSDAINNVKSNEIDIVLFPPFPLV------SAMIASGVSTGTQTVSENTPGAFTGEVDAQLIKELGAQYVLVGHSERRSIYKESNDVVAAKFARA 112          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPI (Triosephosphate isomerase (Fragment) OS=Mycoplasma pirum GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.515e-11
Identity = 40/112 (35.71%), Postives = 54/112 (48.21%), Query Frame = -2
Query:   14 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKV 349
            +K  + GNWK N T +EVK+    LN +                      KSL      +AAQ+      GAFTG +S   L ++ I +VI+GHSERR   NE++D V  KV
Sbjct:    2 KKRIIIGNWKTNKTQKEVKEFFKILNASLKNKNICCTFGVAPVAIHLELAKSLAPKQMIIAAQDANYISSGAFTGTISWSQLKDIKIKYVIVGHSERRMYYNETDDIVNKKV 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_FLAPJ (Triosephosphate isomerase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.515e-11
Identity = 41/116 (35.34%), Postives = 60/116 (51.72%), Query Frame = -2
Query:    2 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349
            R   V GNWK N  SEE + +++ L +                      V     ++  VAAQN    + GA+TGE+SA+ML ++ +  VILGHSERRA+ +E++  +  KV  AL
Sbjct:    2 RAKIVAGNWKMNKNSEETEDLINELIDKLPTNSNAKIIIAPTFINLASAVDHTEFTNIRVAAQNMHQAENGAYTGEISADMLKSIGVNTVILGHSERRAIFHETDAIISFKVDTAL 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.515e-11
Identity = 45/117 (38.46%), Postives = 58/117 (49.57%), Query Frame = -2
Query:    2 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349
            RK  V GNWK N T +E   +   LNEA                     V  L+  +   V A+NC  +  GA+TGEVSAEM+ +    +VILGHSERRA   E+   + +KV  AL
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKASGAYTGEVSAEMVASTGAKYVILGHSERRAYYGETVAILEEKVKLAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 1.515e-11
Identity = 39/118 (33.05%), Postives = 55/118 (46.61%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            + RK  + GNWK + T  E KK VS L                         + L   +  + AQN +    GAFTGE+S  ML  + + +VI+GHSERR +  E ++F+  KV   L
Sbjct:  400 ITRKLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVL 517          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STRMU (Triosephosphate isomerase OS=Streptococcus mutans GN=tpiA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 36/113 (31.86%), Postives = 54/113 (47.79%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+RK  + GNWK N T+ E ++ +  +                         K +  ++  VAAQNC+    GAFTGE S   L  L + +VI+GHSERR   +E++  +  K
Sbjct:    1 MSRKPIIAGNWKMNKTAAEAREFIDAVKNNIPSNNLVDTVIGSPALFLEGMKKGVKGTELQVAAQNCYWEDFGAFTGETSPAALAALGVDYVIIGHSERRDYFHETDQEINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 38/109 (34.86%), Postives = 53/109 (48.62%), Query Frame = -2
Query:   11 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVA 337
            V GNWK NG+   V ++V+ L                         ++   S  H+ AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRTELAGVSGCAVAIAPPEMYLDLAKRAAEGSHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFA 114          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_CLOTH (Triosephosphate isomerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 42/114 (36.84%), Postives = 56/114 (49.12%), Query Frame = -2
Query:   14 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKV 355
            M+RK    GNWK N T +E  + V  L +                      V++   S+  VAAQN    + GAFTGEVS  ML  L + +VI+GHSERR    E+++ V  KV
Sbjct:    1 MSRKVIAAGNWKMNKTPKEAVEFVQAL-KGRVADADTEVVVGVPFVCLPGVVEAAKGSNIKVAAQNMHWEEKGAFTGEVSGPMLAELGVDYVIIGHSERRQYFGETDETVNKKV 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_CARHZ (Triosephosphate isomerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 40/115 (34.78%), Postives = 56/115 (48.70%), Query Frame = -2
Query:    5 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYA 349
            RK F+ GNWK   T  E    V  L ++                      ++L  S+  + AQN    K GAFTGEVS  ML ++ + +VILGHSERRA   E+++ +  K+  A
Sbjct:    2 RKPFIAGNWKMYKTPVEAAGFVRELIDSLKDVSGVDVAVCPPFPALWPVKEALEGSNIALGAQNMHFEKEGAFTGEVSPAMLQDIGVKYVILGHSERRAYFGETDELINQKIKAA 116          
The following BLAST results are available for this feature:
BLAST of CX047198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TPI2_GIALA8.879e-1232.48Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]
TPIS_PSEHT1.515e-1134.48Triosephosphate isomerase OS=Pseudoalteromonas hal... [more]
TPIS_MYCPI1.515e-1135.71Triosephosphate isomerase (Fragment) OS=Mycoplasma... [more]
TPIS_FLAPJ1.515e-1135.34Triosephosphate isomerase OS=Flavobacterium psychr... [more]
TPIS_BACTN1.515e-1138.46Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
PGKT_THEMA1.515e-1133.05Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
TPIS_STRMU1.978e-1131.86Triosephosphate isomerase OS=Streptococcus mutans ... [more]
TPIS_KLEPN1.978e-1134.86Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]
TPIS_CLOTH1.978e-1136.84Triosephosphate isomerase OS=Clostridium thermocel... [more]
TPIS_CARHZ1.978e-1134.78Triosephosphate isomerase OS=Carboxydothermus hydr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12G02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G02-M3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047198 ID=CX047198; Name=CX047198; organism=Citrus sinensis; type=EST; length=386bp
AAAGTGCATAAGCAACTTTATCTCCAACAAAATCATTTGACTCATTCAAA
AGAGCTCTTCTTTCAGAATGACCAAGAATGACCCAAGGAATGCTCAAGTT
GACAAGCATCTCAGCACTAACTTCCCCGGTAAAAGCACCACCTTTGCGAA
CCCAGCAATTTTGAGCGGCAACATGGAAATCAGACCGCAACAGACTCTTG
ACCAAAGGAAGAAACACAAACGGAGGGCTTACAACAACCTCCACAACATC
CTCAGAAGGAACTTCAGCTTCATTCAATGTAGAAACAATCTTCTTCACTT
CCTCAGATGTCCCATTGCATTTCCAGTTGCCGCCGACGAAGAATTTGCGG
GCCATGACGACGATTGAATTTTGTTTGGTTTGGCCT
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