CX047197

Overview
NameCX047197
Unique NameCX047197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length382
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_STRPZ (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 35/113 (30.97%), Postives = 53/113 (46.90%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            M+RK  + GNWK N   +E K  V  +                         ++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_STRPM (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M28 GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 35/113 (30.97%), Postives = 53/113 (46.90%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            M+RK  + GNWK N   +E K  V  +                         ++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_STRPG (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 35/113 (30.97%), Postives = 53/113 (46.90%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            M+RK  + GNWK N   +E K  V  +                         ++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_STRPC (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 35/113 (30.97%), Postives = 53/113 (46.90%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            M+RK  + GNWK N   +E K  V  +                         ++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_STRPB (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 35/113 (30.97%), Postives = 53/113 (46.90%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            M+RK  + GNWK N   +E K  V  +                         ++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_STRP8 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M18 GN=tpiA PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 35/113 (30.97%), Postives = 53/113 (46.90%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            M+RK  + GNWK N   +E K  V  +                         ++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_STRP3 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M3 GN=tpiA PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 35/113 (30.97%), Postives = 53/113 (46.90%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            M+RK  + GNWK N   +E K  V  +                         ++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_STRP1 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M1 GN=tpiA PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 35/113 (30.97%), Postives = 53/113 (46.90%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            M+RK  + GNWK N   +E K  V  +                         ++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPH (Triosephosphate isomerase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 37/111 (33.33%), Postives = 53/111 (47.75%), Query Frame = 2
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            R+  V GNWK NG  ++V ++VS + E                         L      V AQN + +  GA+TGE+SA ML +    +V++GHSERR   +E  +FV  K
Sbjct:    2 RQKIVAGNWKMNGQIQQVTELVSQIEELIGFDCAAQVAVMPPSIYIPKVRDCLRTGKIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQK 112          
The following BLAST results are available for this feature:
BLAST of CX047197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TPIS_STRPZ9.855e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRPM9.855e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRPG9.855e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRPC9.855e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRPB9.855e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRP89.855e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRP39.855e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRP19.855e-1130.97Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_LEGPH9.855e-1133.33Triosephosphate isomerase OS=Legionella pneumophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12G02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G02-M3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047197 ID=CX047197; Name=CX047197; organism=Citrus sinensis; type=EST; length=382bp
CCAAACCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCG
GCGGCAACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTT
TCTACATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGT
TGTAAGCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGT
CTGATTTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCT
TTTACCGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTG
GGTCATTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATG
ATTTTGTTGGAGATAAAGTTGCTTATGCACTT
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