CX047197

Overview
NameCX047197
Unique NameCX047197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length382
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.373e-18
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            M R+FFVGGN+K NGT+E +  I+  LNEA+                      +  +    V++QN + +  GAFTGE+S   L +  IPW I+GHSERR +L E+++F+  KV  A+
Sbjct:    1 MPRQFFVGGNFKMNGTAESITAIIKNLNEAKLDETTEVVVSPPALYLTLAQQVADEKKKVAVSSQNVFDKPNGAFTGEISVSQLQDAKIPWTIIGHSERRVILKETDEFIARKVKAAI 118          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.324e-18
Identity = 50/118 (42.37%), Postives = 66/118 (55.93%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            M+R FFVGGN+K NG+ E +K IV  LN +E                     +SL +    VA QN + +  GAFTGEVS   L ++   WVILGHSERR +  ES++++ DK  YAL
Sbjct:    1 MSRTFFVGGNFKMNGSLESIKAIVERLNASELDPKTEVVISPPFPYLLLAK-ESLKKPTVSVAGQNSFDKGDGAFTGEVSVAQLKDVGAKWVILGHSERRTINKESSEWIADKTKYAL 117          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.087e-17
Identity = 46/116 (39.66%), Postives = 65/116 (56.03%), Query Frame = 2
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            RKFFVGGNWK NG  + + ++++TLN  +                     K  L +   ++AQNC+    GAFTGE+S  M+ +    WVILGHSERR +  E ++ +G KVA+AL
Sbjct:    4 RKFFVGGNWKMNGDKKSLGELINTLNSGKMNADTEVVCGAPAIYLDFARQK--LDAKIALSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGECDELIGQKVAHAL 117          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 88.5817 bits (218), Expect = 1.087e-17
Identity = 47/118 (39.83%), Postives = 67/118 (56.78%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            MARKFFVGGN+K NG+ E +K I+  LN  +                     + + + D  V AQN + +K GA+TGE SA+ L++  I + + GHSERR +  ES++FV DK  +AL
Sbjct:    1 MARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNMYLITTRQQV-KKDIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFAL 117          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.420e-17
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 2
Query:   56 NWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERR--ALLNESNDFVGDKVAYAL 382
            NWKCN +  ++ ++VS  N A                      +  LR+DF  +AQN W+ KGGAFTGE+ A M+ ++   WVILGHSERR  A L ES+  +  K AYAL
Sbjct:    1 NWKCNLSKADIAELVSAFNAAPPIDAAHVQVVVAPPAVYLDSTRQALRADFDTSAQNAWISKGGAFTGELDAAMVKDVGAEWVILGHSERRHIAQLKESDHTIAMKAAYAL 111          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.395e-17
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            MAR FFVGGN+K NGT   +K+IV  LN A+                       + +S   V AQN +++  GAFTGE S + + ++   WVILGHSERR    E +  + +K A+AL
Sbjct:    1 MARTFFVGGNFKLNGTKSSIKEIVERLNNAKLDPKVEVVLCPPAPYLDYTV-SLVKKSQVSVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRQYFREDDQLIAEKTAFAL 117          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.046e-17
Identity = 45/116 (38.79%), Postives = 63/116 (54.31%), Query Frame = 2
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            R FFVGGN K NG+   ++ +   +NE+                        L    F V +QNC+    GAFTGE+SA MLV+L IP+VI+GHSERR + +ES++ +  K  YA+
Sbjct:    5 RTFFVGGNHKMNGSKSMLESLSKGMNESVENKENVDIFIAPSYPYLEFLSNKLDNKKFKVCSQNCYSVAKGAFTGEISANMLVDLGIPYVIIGHSERRNVFSESSELITKKTKYAI 120          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRS-DFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            MAR FFVGGN+K NG+ + +K+IV  LN A                       SL++     V AQN +++  GAFTGE S + + ++   WVILGHSERR+  +E + F+ DK  +AL
Sbjct:    1 MARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSV--SLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFAL 117          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 45/118 (38.14%), Postives = 62/118 (52.54%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            M RKFFVGGN+K NG +E    I+  LN A                      + +   +  VAAQN + +  GAFTGE+S + L   +I W ILGHSERR +L E+++F+  K   A+
Sbjct:    1 MPRKFFVGGNFKMNGNAESTTSIIKNLNSANLDKSVEVVVSPPALYLLQA--REVANKEIGVAAQNVFDKPNGAFTGEISVQQLREANIDWTILGHSERRVILKETDEFIARKTKAAI 116          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            M+RKF VGGNWK NG  + + +I  TL+ A                      ++LL  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL
Sbjct:    1 MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHAL 116          
The following BLAST results are available for this feature:
BLAST of CX047197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TPIS_ASPOR6.373e-1838.14Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_YARLI8.324e-1842.37Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]
TPIS_XENLA1.087e-1739.66Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPIS_SCHPO1.087e-1739.83Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_GRAVE1.420e-1741.44Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_ZYGBA5.395e-1738.98Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_DICDI7.046e-1738.79Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPIS_YEAST1.202e-1639.50Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_EMENI1.202e-1638.14Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_DROYA1.202e-1638.98Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12G02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G02-M3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047197 ID=CX047197; Name=CX047197; organism=Citrus sinensis; type=EST; length=382bp
CCAAACCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCG
GCGGCAACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTT
TCTACATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGT
TGTAAGCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGT
CTGATTTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCT
TTTACCGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTG
GGTCATTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATG
ATTTTGTTGGAGATAAAGTTGCTTATGCACTT
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