CX047197

Overview
NameCX047197
Unique NameCX047197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length382
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_CYTH3 (Triosephosphate isomerase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.375e-12
Identity = 40/117 (34.19%), Postives = 59/117 (50.43%), Query Frame = 2
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTL-NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            RK  + GNWK N T EE   + S + N A+                       ++     + AQN + ++ GAFTGE+SA ML ++ + +VI+GHSERR    E+N  + DKV  +L
Sbjct:    2 RKKVIAGNWKMNKTLEEGLSLASEVANMAKDEVPADVNLVMCIPYISLAAVSKVINDKVAIGAQNVYQKESGAFTGEISAPMLKSVGVKYVIIGHSERREYFGETNQQLADKVTISL 118          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_ALKOO (Triosephosphate isomerase OS=Alkaliphilus oremlandii (strain OhILAs) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.375e-12
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 2
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            RK  + GNWK N  S+E   +V+ + + E                     K+L+ ++  + AQN    + GA+TGE+SA ML ++ + +VILGHSERR   NE+++ V  KV  A+
Sbjct:    2 RKPIIAGNWKMNKVSKEALDLVNQIKD-EVHKTEVEVVVCCPFTVLSQVQKALVGTNLKLGAQNMHWEEDGAYTGEISANMLKDIGVEYVILGHSERRQYFNETDETVNKKVKKAI 116          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.796e-12
Identity = 40/116 (34.48%), Postives = 58/116 (50.00%), Query Frame = 2
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYA 379
            R+  + GNWK NGT++    + + + +                       + ++  S   + AQN  V   GAFTGE+S EML ++   +VILGHSERR L  E+N+ V  KVA A
Sbjct:    2 RRALIAGNWKLNGTTQAATALATAVRDGVAANKPDCDVLVCPTFTVLSAVQGVVAGSGVDLGAQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASA 117          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_FINM2 (Triosephosphate isomerase OS=Finegoldia magna (strain ATCC 29328) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.796e-12
Identity = 41/116 (35.34%), Postives = 58/116 (50.00%), Query Frame = 2
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            RK  + GNWK N T  E K+ ++ L   +                     + L  S+    AQN +  + GAFTGEVS  ML +L I +VI+GHSERR +  E ++ +  K+A AL
Sbjct:    2 RKPLIAGNWKMNKTDGETKQFINDLKCLDISDNVEACIISPFTSLKTLT-EDLRNSNISTGAQNMYYEECGAFTGEVSPNMLKDLGIDYVIIGHSERRTIFKEDDELLNKKIASAL 116          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_COLP3 (Triosephosphate isomerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.796e-12
Identity = 46/121 (38.02%), Postives = 60/121 (49.59%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXK---SLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            M R+  V  NWK NG S  V  +VS L + E                     K   + L    HV +QN    + GA+TGEVS  ML NL+I +VI+GHSERR++  E++  V  KV  AL
Sbjct:    1 MTRQAIVAANWKMNGDSALVDTMVSGLADIELSSHVDVVICPSFPYLSELNQKIKAANLNEAIHVGSQNVSEHESGAYTGEVSTAMLQNLAINYVIVGHSERRSIFKETSTQVAKKVHAAL 121          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBA (Triosephosphate isomerase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.346e-12
Identity = 43/115 (37.39%), Postives = 56/115 (48.70%), Query Frame = 2
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYA 379
            RK  + GNWK N T +E  K+V  L                         K+   S+  VAAQN    + GAFTGEVS  ML  + I +V+LGHSERR   NE+++ +  KV  A
Sbjct:    2 RKAIIAGNWKMNKTVDEAVKVVEELKPL-VKDATCDVVVCPTFVCLDAVKKATAGSNIKVAAQNMHFEESGAFTGEVSPGMLEAMGIEYVVLGHSERREYFNETDEAINKKVKAA 115          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_HAHCH (Triosephosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.064e-12
Identity = 40/116 (34.48%), Postives = 60/116 (51.72%), Query Frame = 2
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            RK  + GNWK NG+ E  K ++  +  A+                      ++  S   + +QNC   + GA+TGEVSA+M  ++   WVILGHSERRAL  E+++ +  KV  A+
Sbjct:    2 RKKLIAGNWKSNGSLERNKALLEGIVNAKALGSVDVVVCPPFPYLQSVE-SAVSDSMIELGSQNCSATEDGAYTGEVSAKMCADMKCSWVILGHSERRALYAENDEVIACKVKRAV 116          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_STRGC (Triosephosphate isomerase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.001e-12
Identity = 37/113 (32.74%), Postives = 54/113 (47.79%), Query Frame = 2
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            M+RK F+ GNWK N   EE K  V  +                          +   S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPAVDLTAVLAAAKGSNLKVAAQNCYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_FLAJ1 (Triosephosphate isomerase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.001e-12
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 2
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            RK  V GNWK +  + + +++++ L                           L  +   V+AQN    +GGAFTGE+SA+ML ++ +  VILGHSERRA+ +E++  + +KV  AL
Sbjct:    2 RKSIVAGNWKMHKNAAQTEELLNELIAKIPAKTNAQVIVAPTFVNLQAAAAKLKNTTIGVSAQNVHQAEGGAFTGEISADMLTSIGVNTVILGHSERRAIFHETDALIANKVDTAL 117          
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBB (Triosephosphate isomerase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.226e-12
Identity = 42/115 (36.52%), Postives = 56/115 (48.70%), Query Frame = 2
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYA 379
            RK  + GNWK N T +E  K+V  L                         K+   S+  VAAQN    + GAFTGEV+  ML  + I +V+LGHSERR   NE+++ +  KV  A
Sbjct:    2 RKAIIAGNWKMNKTVDEAVKVVEELKPL-VKDATCDVVVCPTFVCLDAVKKATAGSNIKVAAQNMHFEESGAFTGEVAPGMLEAMGIEYVVLGHSERREYFNETDEAINKKVKAA 115          
The following BLAST results are available for this feature:
BLAST of CX047197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TPIS_CYTH31.375e-1234.19Triosephosphate isomerase OS=Cytophaga hutchinsoni... [more]
TPIS_ALKOO1.375e-1234.48Triosephosphate isomerase OS=Alkaliphilus oremland... [more]
TPIS_MAGSM1.796e-1234.48Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_FINM21.796e-1235.34Triosephosphate isomerase OS=Finegoldia magna (str... [more]
TPIS_COLP31.796e-1238.02Triosephosphate isomerase OS=Colwellia psychreryth... [more]
TPIS_CLOBA2.346e-1237.39Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_HAHCH3.064e-1234.48Triosephosphate isomerase OS=Hahella chejuensis (s... [more]
TPIS_STRGC4.001e-1232.74Triosephosphate isomerase OS=Streptococcus gordoni... [more]
TPIS_FLAJ14.001e-1233.62Triosephosphate isomerase OS=Flavobacterium johnso... [more]
TPIS_CLOBB5.226e-1236.52Triosephosphate isomerase OS=Clostridium botulinum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12G02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G02-M3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047197 ID=CX047197; Name=CX047197; organism=Citrus sinensis; type=EST; length=382bp
CCAAACCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCG
GCGGCAACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTT
TCTACATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGT
TGTAAGCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGT
CTGATTTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCT
TTTACCGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTG
GGTCATTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATG
ATTTTGTTGGAGATAAAGTTGCTTATGCACTT
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