CX047197

Overview
NameCX047197
Unique NameCX047197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length382
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.226e-12
Identity = 43/117 (36.75%), Postives = 55/117 (47.01%), Query Frame = 2 
Query:   35 RKFFVGGNWKCNGT-SEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            R+  V GNWK N T +E ++   +   +                       K++  S   +AAQNC     GAFTGEVS  ML      +VILGHSERR L  E+N+ V  KV  AL
Sbjct:    2 RRTIVVGNWKMNNTIAESIELATAIAEKVGATKPECEVGIAPTFPALHEVGKTIEWSGVQLAAQNCHYENDGAFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNEIVNRKVKKAL 118
[Close]
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.226e-12
Identity = 44/117 (37.61%), Postives = 58/117 (49.57%), Query Frame = 2 
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            RK  V GNWK N T +E   +   LNEA                        L+  +   V A+NC  ++ GA+TGEVSA M+ +    +VILGHSERRA   E+ + + DKV  AL
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLAL 118
[Close]
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.226e-12
Identity = 44/117 (37.61%), Postives = 58/117 (49.57%), Query Frame = 2 
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            RK  V GNWK N T +E   +   LNEA                        L+  +   V A+NC  ++ GA+TGEVSA M+ +    +VILGHSERRA   E+ + + DKV  AL
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLAL 118
[Close]
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_ALKMQ (Triosephosphate isomerase OS=Alkaliphilus metalliredigens (strain QYMF) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.825e-12
Identity = 39/116 (33.62%), Postives = 58/116 (50.00%), Query Frame = 2 
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 382
            RK  + GNWK N T  E  + ++ + + +                     K+L  S   + AQN      GAFTGE+SAEML  L + ++++GHSERR   NE+++ V  K+  AL
Sbjct:    2 RKPIIAGNWKMNKTVAETLQFINEIRD-QAETTDVEVVLCCPFTALSEAKKALGASKIKLGAQNMHWEDNGAFTGEISAEMLKELGVDYILIGHSERRQYFNETDETVNKKIKKAL 116
[Close]
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_STRR6 (Triosephosphate isomerase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.914e-12
Identity = 37/113 (32.74%), Postives = 53/113 (46.90%), Query Frame = 2 
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            M+RK F+ GNWK N   EE K  V  +                              S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKK 113
[Close]
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_STRPN (Triosephosphate isomerase OS=Streptococcus pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.914e-12
Identity = 37/113 (32.74%), Postives = 53/113 (46.90%), Query Frame = 2 
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            M+RK F+ GNWK N   EE K  V  +                              S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKK 113
[Close]
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_STRPI (Triosephosphate isomerase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.914e-12
Identity = 37/113 (32.74%), Postives = 53/113 (46.90%), Query Frame = 2 
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            M+RK F+ GNWK N   EE K  V  +                              S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKK 113
[Close]
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_STRP4 (Triosephosphate isomerase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.914e-12
Identity = 37/113 (32.74%), Postives = 53/113 (46.90%), Query Frame = 2 
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            M+RK F+ GNWK N   EE K  V  +                              S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKK 113
[Close]
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_STRP2 (Triosephosphate isomerase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.914e-12
Identity = 37/113 (32.74%), Postives = 53/113 (46.90%), Query Frame = 2 
Query:   29 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 367
            M+RK F+ GNWK N   EE K  V  +                              S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKK 113
[Close]
BLAST of CX047197 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB8 (Triosephosphate isomerase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.914e-12
Identity = 42/115 (36.52%), Postives = 57/115 (49.57%), Query Frame = 2 
Query:   35 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYA 379
            RK  + GNWK N T +E  K+V  L                         K++  S+  VAAQN    + GAFTGEV+  ML  + I +V+LGHSERR   NE+++ +  KV  A
Sbjct:    2 RKAIIAGNWKMNKTIDEAVKMVEELKPL-VKDATCDVVVCPTFVCLDAVKKAVAGSNIKVAAQNMHFEESGAFTGEVAPGMLEAMGIDYVVLGHSERREYFNETDEALNKKVKKA 115
The following BLAST results are available for this feature:
BLAST of CX047197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TPIS_CHLP85.226e-1236.75Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]
TPIS_BACFR5.226e-1237.61Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN5.226e-1237.61Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_ALKMQ6.825e-1233.62Triosephosphate isomerase OS=Alkaliphilus metallir... [more]
TPIS_STRR68.914e-1232.74Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRPN8.914e-1232.74Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRPI8.914e-1232.74Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRP48.914e-1232.74Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRP28.914e-1232.74Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_CLOB88.914e-1236.52Triosephosphate isomerase OS=Clostridium beijerinc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12G02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G02-M3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047197 ID=CX047197; Name=CX047197; organism=Citrus sinensis; type=EST; length=382bp
CCAAACCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCG
GCGGCAACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTT
TCTACATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGT
TGTAAGCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGT
CTGATTTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCT
TTTACCGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTG
GGTCATTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATG
ATTTTGTTGGAGATAAAGTTGCTTATGCACTT
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