CX047192

Overview
NameCX047192
Unique NameCX047192
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: POL_FOAMV (Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.832e-17
Identity = 62/217 (28.57%), Postives = 99/217 (45.62%), Query Frame = 2
Query:  122 HSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMASPWL-FAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVP 769
            H+G  +   K+    Y+WP M +D  ++   C  C    N SN+    +     P   F ++ ID IGPLP  +G   + +V +D  T +  +      +   T   +  N++    IP  + +D G  F + +F ++ +  GI L++ +P HPQS  +VE  N  +KRLL   L  +   W D L  V  A   T+      TP  L FG ++  P
Sbjct:  817 HTGREATLLKIANL-YWWPNMRKDVVKQLGRCQQCL-ITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQGYL-YVLVVVDGMTGFTWLYPTKAPSTSATVKSL--NVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTP 1028          
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: GIN1_MACFA (Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis GN=GIN1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.082e-17
Identity = 64/250 (25.60%), Postives = 106/250 (42.40%), Query Frame = 2
Query:   62 LDDDDADYVLREVHEGICGNHSG-GRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFAN-FSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSN-GQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVPAEVGTTTHRTD 802
            + +++   VLRE HE   G H G  R+L   ++   Y+W ++  D ++   +C  CQ   N     P + L  + +PW      +DL+GP      +  +AI+  D FTKW+ +  L  ++  + +  +  N+   YG P  ++ D   +F      +  +  GI  K    +H       +E    T+K  L          W D LS V +A+  TH   T  TP+   F     +P E   + H  D
Sbjct:   65 VSEEEKKKVLRECHENDSGAHHGISRTLT--LVESNYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPKQHLLKVENPWSLVT--VDLMGPFHTSNRSHVYAIIMTDLFTKWVVILPLCDVSASEVSKAII-NIFFLYGPPQKIIMDQRDEFIQQINIELYRLFGI--KQIVISHTSGTVSPMETTPSTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMP-ETSDSLHDVD 306          
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: GIN1_BOVIN (Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus GN=GIN1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.082e-17
Identity = 61/230 (26.52%), Postives = 100/230 (43.48%), Query Frame = 2
Query:   86 VLREVHEGICGNHSG-GRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFAN-FSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVP 769
            VLRE HE   G H G  R+L   ++   Y+W ++  D ++   +C  CQ   N     P + L  + +PW      +DL+GP      +  +AI+  D FTKW+ +  L  ++  + +  +  N+   YG P  ++ D   +F +    + C+  G +    S A  Q+    E+   T+K  L          W D L  V +A+  TH   T  TP+   F     +P
Sbjct:   51 VLRECHENDTGAHHGISRTLT--LVESSYYWTSVTNDVKQWVYACQHCQVAKNTVILAPKQHLLKVENPWSIVT--VDLMGPFHTSNRSHVYAIIMTDLFTKWVVILPLCDVSASEISKAII-NIFFLYGPPQKIIMDQRDEFIHQINVELCELFGTKQIVISHAS-QTINPAESTPSTIKTFLSKHCVDYPNDWDDHLPAVSFAFNVTHLEPTKNTPYFQMFNRNPYMP 274          
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: YRD6_CAEEL (Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.513e-16
Identity = 68/230 (29.57%), Postives = 102/230 (44.35%), Query Frame = 2
Query:   86 VLREVHEGICGNHSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMASPWLF--AQWG---IDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTT-HKTATGETPFALAFGHE 757
            VL+++HEG    H G   +  K  R   FW  +  D +   R C +CQ  +      P       +PW    A W    ID  GPL        + +V +D  TK+ EV+    I+   T D +   +   +G P  +++DNG Q  +H F   CQ+ GIE K  +  +P+SNG  E    T+KR +  ++  +       L+  L +YR T H    G TP    FG +
Sbjct:  786 VLKQLHEG----HPGIVQMKQKA-RSFVFWRGLDSDIENMVRHCNNCQENSKMPRVVP------LNPWPVPEAPWKRIHIDFAGPLN-----GCYLLVVVDAKTKYAEVKLTRSISAVTTIDLL-EEIFSIHGYPETIISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFVDTLKRGI-AKIKGEGSVNQQILNKFLISYRNTPHSALNGSTPAECHFGRK 997          
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: GIN1_MOUSE (Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus GN=Gin1 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.112e-14
Identity = 61/246 (24.80%), Postives = 105/246 (42.68%), Query Frame = 2
Query:   62 LDDDDADYVLREVHEGICGNHSG-GRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEK-LTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVV---PAEVGT 784
            + +++   VLRE HE   G H G  R+L   ++  GY+W ++  D ++   +C  CQ   N     P++ L  + +PW      +DL+GP      +  +AI+  D FTKW+ +  L  ++  + +  +  N+   YG P  ++ D   +F      +  +  G +    S A    N   E    T+K  L         +W + L  + +A+  TH      TP+   F     V   P E G+
Sbjct:   65 VSEEEKKKVLRECHENGPGVHHGISRTLT--LVESGYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPQQHLPMVGNPWSVVT--VDLMGPFHTSNRSHVYAIIMTDLFTKWVMILPLCDVSASEISKAI-INIFFLYGPPQKIIMDQRDEFIEQINVELYRLFGAKEIVISRASGSVN-PAENTPSTIKTFLSKHCADHPNSWDEHLPALSFAFNVTHLEPNKNTPYFQMFNRNPCVLECPPEEGS 304          
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: GIN1_RAT (Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus GN=GIN1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.671e-13
Identity = 55/231 (23.81%), Postives = 102/231 (44.16%), Query Frame = 2
Query:   62 LDDDDADYVLREVHEGICGNHSG-GRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQ-SFANFSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAF 748
            + +++   VLRE HE   G H G  R+L   ++   Y+W ++  D ++   +C  CQ + +     P + L+ + +PW      +DL+GP      +  +A++  D FTKW+ +  L  ++  + +  +  N+   YG P  ++ D   +F +    +  +  G +    S A    N   E+   TVK  L          W +EL  + +A+  T    T  +P+   F
Sbjct:   65 VSEEEKKKVLRECHENGPGVHHGISRTLT--LVESSYYWTSVTNDVKQWVYACQHCQVAKSTVIVAPQQHLSVVGNPWSVVT--VDLMGPFHTSSRSHVYAMIMTDLFTKWVMILPLCDVSASEISKAI-INIFFLYGPPQKIIMDQRDEFIDQINVELYRLFGAKEIVISQASGSVNPS-ESTPSTVKTFLSKHCAEHPETWDEELPALSFAFNVTRVEPTKNSPYFQMF 289          
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.359e-12
Identity = 57/236 (24.15%), Postives = 103/236 (43.64%), Query Frame = 2
Query:   86 VLREVHEG-ICGNHSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMASPWLFAQ--W---GIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEK-KTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVPA 772
            V+R  H+  + G H G      K+    Y+WP +     +  R+C  CQ     S++P  +L  +  P   A+  W    +D +  LP         +V +D F+K     A  +  +  +  D ++R +   +G P  + +D   +     +++  + LGI+    S  HPQ++GQ E   +T+ RLL+  +      W   L  + + Y +T     G++PF +  G+    PA
Sbjct: 1125 VMRLYHDHTLFGGHFGVTVTLAKI-SPIYYWPKLQHSIIQYIRTCVQCQLIK--SHRP--RLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPA 1355          
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 57/236 (24.15%), Postives = 102/236 (43.22%), Query Frame = 2
Query:   86 VLREVHEG-ICGNHSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMASPWLFAQ--W---GIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEK-KTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVPA 772
            V+R  H+  + G H G      K+    Y+WP +     +  R+C  CQ     S++P  +L  +  P   A+  W    +D +  LP         +V +D F+K     A  +  +  +  D ++R +   +G P  + +D   +     +++  + LGI+    S  HPQ++GQ E   +T+ RLL+         W   L  + + Y +T     G++PF +  G+    PA
Sbjct: 1099 VMRLYHDHTLFGGHFGVTVTLAKI-SPIYYWPKLQHSIIQYIRTCVQCQLIK--SHRP--RLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPA 1329          
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: POL_MLVMO (Gag-Pol polyprotein OS=Moloney murine leukemia virus GN=gag-pol PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12
Identity = 58/196 (29.59%), Postives = 84/196 (42.86%), Query Frame = 2
Query:  167 YFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKR-LLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFG 751
            Y+     +  +  T +C +C    N S    ++ T +        W ID     P G     + +V ID F+ WIE     + T K  T  +   +  R+G+P  L TDNG  F +   +     LGI+ K      PQS+GQVE  N+T+K  L K  L      WV  L   L+  R T     G TP+ + +G
Sbjct: 1408 YYMLNRDRTLKNITETCKACAQ-VNASKSAVKQGTRVRGHRPGTHWEIDFTEIKP-GLYGYKYLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG 1600          
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: POL_BAEVM (Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12
Identity = 63/233 (27.04%), Postives = 101/233 (43.35%), Query Frame = 2
Query:   62 LDDDDADYVLREVHEGICGNHSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSF-ANFSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGA--WVDELSGVLWAYRTTHKTATGETPFALAFG 751
            L   +A  +++++H      H G R L   + +  +  P      ++ T +C  CQ   A  +  P  K T    P ++  W ID     P   G   + +V +D F+ W+E     + T       +   +  R+G+P  + +DNG  F +   +   + LGI  K      PQS+GQVE  N+T+K  L T+L  + G   W   LS  L   R T     G TP+ + +G
Sbjct:  832 LPQKEALAMIQQMH---AWTHLGNRKLKLLIEKTDFLIPRASTLIEQVTSACKVCQQVNAGATRVPAGKRTRGNRPGVY--WEIDFTEVKPHYAGYK-YLLVFVDTFSGWVEAFPTRQETAHIVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETL-TKLTLETGLKDWRRLLSLALLRARNT-PNRFGLTPYEILYG 1056          
The following BLAST results are available for this feature:
BLAST of CX047192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
POL_FOAMV1.832e-1728.57Pro-Pol polyprotein OS=Human spumaretrovirus GN=po... [more]
GIN1_MACFA4.082e-1725.60Gypsy retrotransposon integrase-like protein 1 OS=... [more]
GIN1_BOVIN4.082e-1726.52Gypsy retrotransposon integrase-like protein 1 OS=... [more]
YRD6_CAEEL4.513e-1629.57Uncharacterized protein K02A2.6 OS=Caenorhabditis ... [more]
GIN1_MOUSE1.112e-1424.80Gypsy retrotransposon integrase-like protein 1 OS=... [more]
GIN1_RAT4.671e-1323.81Gypsy retrotransposon integrase-like protein 1 OS=... [more]
YI31B_YEAST1.359e-1224.15Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
YG31B_YEAST2.318e-1224.15Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]
POL_MLVMO6.744e-1229.59Gag-Pol polyprotein OS=Moloney murine leukemia vir... [more]
POL_BAEVM6.744e-1227.04Pol polyprotein OS=Baboon endogenous virus (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F11-K21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047192 ID=CX047192; Name=CX047192; organism=Citrus sinensis; type=EST; length=900bp
ATACACGATGATCGATGGGGTACTGTATCGGCGAGGATATACATTACCGT
TCCTTCGGTGTTTGGACGATGACGACGCGGATTACGTGCTGAGGGAAGTA
CATGAAGGAATTTGCGGAAATCATTCTGGCGGGAGGTCCCTGGCCCACAA
GGTTCTAAGGCAGGGATATTTCTGGCCGACGATGCACCAGGATGCGCAAA
GGAAGACCAGGAGCTGTGCAAGCTGCCAGAGTTTTGCAAATTTCTCTAAC
CAACCACCAGAGAAGCTCACCTCCATGGCCTCCCCTTGGCTATTCGCTCA
ATGGGGAATTGATCTGATCGGCCCATTGCCAAAGGGACGAGGAGCAGCAA
CACATGCAATAGTTGCTATAGATTACTTCACGAAGTGGATAGAGGTAGAA
GCCCTTAGCAGGATCACAGAGAAGAAAACAACAGACTTCGTGTGGAGAAA
CCTGGTCTGTCGATACGGGATCCCATATGCCTTGGTAACGGATAATGGCA
GGCAGTTCGATAATCACAGCTTCAGGGATTTCTGCCAGAACCTCGGGATA
GAGCTGAAGTATTGCTCGCCTGCTCACCCTCAATCGAATGGACAAGTAGA
AGCAGCCAACAAGACAGTCAAGAGGCTTCTGAAAACCAGGCTCGGAGCAA
AAAAGGGTGCGTGGGTTGACGAGCTGTCAGGTGTGCTATGGGCATACAGA
ACAACCCACAAAACCGCAACTGGGGAGACACCGTTCGCTTTGGCTTTTGG
ACATGAAGCGGTCGTACCGGCTGAGGTAGGAACGACCACACACCGGACAG
ATTATTTCAATGAACAGGAGAACGACGAGCAGATATGTTTGAATCTTGAT
CTGCTAATGGAGAGGAGGGACAAGCAGCCGAGCGATCAGTCACTTACCAG
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