CX047192
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: POL_FOAMV (Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.832e-17 Identity = 62/217 (28.57%), Postives = 99/217 (45.62%), Query Frame = 2 Query: 122 HSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMASPWL-FAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVP 769 H+G + K+ Y+WP M +D ++ C C N SN+ + P F ++ ID IGPLP +G + +V +D T + + + T + N++ IP + +D G F + +F ++ + GI L++ +P HPQS +VE N +KRLL L + W D L V A T+ TP L FG ++ P Sbjct: 817 HTGREATLLKIANL-YWWPNMRKDVVKQLGRCQQCL-ITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQGYL-YVLVVVDGMTGFTWLYPTKAPSTSATVKSL--NVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTP 1028
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: GIN1_MACFA (Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis GN=GIN1 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 4.082e-17 Identity = 64/250 (25.60%), Postives = 106/250 (42.40%), Query Frame = 2 Query: 62 LDDDDADYVLREVHEGICGNHSG-GRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFAN-FSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSN-GQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVPAEVGTTTHRTD 802 + +++ VLRE HE G H G R+L ++ Y+W ++ D ++ +C CQ N P + L + +PW +DL+GP + +AI+ D FTKW+ + L ++ + + + N+ YG P ++ D +F + + GI K +H +E T+K L W D LS V +A+ TH T TP+ F +P E + H D Sbjct: 65 VSEEEKKKVLRECHENDSGAHHGISRTLT--LVESNYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPKQHLLKVENPWSLVT--VDLMGPFHTSNRSHVYAIIMTDLFTKWVVILPLCDVSASEVSKAII-NIFFLYGPPQKIIMDQRDEFIQQINIELYRLFGI--KQIVISHTSGTVSPMETTPSTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMP-ETSDSLHDVD 306
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: GIN1_BOVIN (Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus GN=GIN1 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 4.082e-17 Identity = 61/230 (26.52%), Postives = 100/230 (43.48%), Query Frame = 2 Query: 86 VLREVHEGICGNHSG-GRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFAN-FSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVP 769 VLRE HE G H G R+L ++ Y+W ++ D ++ +C CQ N P + L + +PW +DL+GP + +AI+ D FTKW+ + L ++ + + + N+ YG P ++ D +F + + C+ G + S A Q+ E+ T+K L W D L V +A+ TH T TP+ F +P Sbjct: 51 VLRECHENDTGAHHGISRTLT--LVESSYYWTSVTNDVKQWVYACQHCQVAKNTVILAPKQHLLKVENPWSIVT--VDLMGPFHTSNRSHVYAIIMTDLFTKWVVILPLCDVSASEISKAII-NIFFLYGPPQKIIMDQRDEFIHQINVELCELFGTKQIVISHAS-QTINPAESTPSTIKTFLSKHCVDYPNDWDDHLPAVSFAFNVTHLEPTKNTPYFQMFNRNPYMP 274
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: YRD6_CAEEL (Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.513e-16 Identity = 68/230 (29.57%), Postives = 102/230 (44.35%), Query Frame = 2 Query: 86 VLREVHEGICGNHSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMASPWLF--AQWG---IDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTT-HKTATGETPFALAFGHE 757 VL+++HEG H G + K R FW + D + R C +CQ + P +PW A W ID GPL + +V +D TK+ EV+ I+ T D + + +G P +++DNG Q +H F CQ+ GIE K + +P+SNG E T+KR + ++ + L+ L +YR T H G TP FG + Sbjct: 786 VLKQLHEG----HPGIVQMKQKA-RSFVFWRGLDSDIENMVRHCNNCQENSKMPRVVP------LNPWPVPEAPWKRIHIDFAGPLN-----GCYLLVVVDAKTKYAEVKLTRSISAVTTIDLL-EEIFSIHGYPETIISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFVDTLKRGI-AKIKGEGSVNQQILNKFLISYRNTPHSALNGSTPAECHFGRK 997
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: GIN1_MOUSE (Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus GN=Gin1 PE=2 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 1.112e-14 Identity = 61/246 (24.80%), Postives = 105/246 (42.68%), Query Frame = 2 Query: 62 LDDDDADYVLREVHEGICGNHSG-GRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEK-LTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVV---PAEVGT 784 + +++ VLRE HE G H G R+L ++ GY+W ++ D ++ +C CQ N P++ L + +PW +DL+GP + +AI+ D FTKW+ + L ++ + + + N+ YG P ++ D +F + + G + S A N E T+K L +W + L + +A+ TH TP+ F V P E G+ Sbjct: 65 VSEEEKKKVLRECHENGPGVHHGISRTLT--LVESGYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPQQHLPMVGNPWSVVT--VDLMGPFHTSNRSHVYAIIMTDLFTKWVMILPLCDVSASEISKAI-INIFFLYGPPQKIIMDQRDEFIEQINVELYRLFGAKEIVISRASGSVN-PAENTPSTIKTFLSKHCADHPNSWDEHLPALSFAFNVTHLEPNKNTPYFQMFNRNPCVLECPPEEGS 304
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: GIN1_RAT (Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus GN=GIN1 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.671e-13 Identity = 55/231 (23.81%), Postives = 102/231 (44.16%), Query Frame = 2 Query: 62 LDDDDADYVLREVHEGICGNHSG-GRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQ-SFANFSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAF 748 + +++ VLRE HE G H G R+L ++ Y+W ++ D ++ +C CQ + + P + L+ + +PW +DL+GP + +A++ D FTKW+ + L ++ + + + N+ YG P ++ D +F + + + G + S A N E+ TVK L W +EL + +A+ T T +P+ F Sbjct: 65 VSEEEKKKVLRECHENGPGVHHGISRTLT--LVESSYYWTSVTNDVKQWVYACQHCQVAKSTVIVAPQQHLSVVGNPWSVVT--VDLMGPFHTSSRSHVYAMIMTDLFTKWVMILPLCDVSASEISKAI-INIFFLYGPPQKIIMDQRDEFIDQINVELYRLFGAKEIVISQASGSVNPS-ESTPSTVKTFLSKHCAEHPETWDEELPALSFAFNVTRVEPTKNSPYFQMF 289
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.359e-12 Identity = 57/236 (24.15%), Postives = 103/236 (43.64%), Query Frame = 2 Query: 86 VLREVHEG-ICGNHSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMASPWLFAQ--W---GIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEK-KTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVPA 772 V+R H+ + G H G K+ Y+WP + + R+C CQ S++P +L + P A+ W +D + LP +V +D F+K A + + + D ++R + +G P + +D + +++ + LGI+ S HPQ++GQ E +T+ RLL+ + W L + + Y +T G++PF + G+ PA Sbjct: 1125 VMRLYHDHTLFGGHFGVTVTLAKI-SPIYYWPKLQHSIIQYIRTCVQCQLIK--SHRP--RLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPA 1355
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3) HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12 Identity = 57/236 (24.15%), Postives = 102/236 (43.22%), Query Frame = 2 Query: 86 VLREVHEG-ICGNHSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMASPWLFAQ--W---GIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEK-KTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVPA 772 V+R H+ + G H G K+ Y+WP + + R+C CQ S++P +L + P A+ W +D + LP +V +D F+K A + + + D ++R + +G P + +D + +++ + LGI+ S HPQ++GQ E +T+ RLL+ W L + + Y +T G++PF + G+ PA Sbjct: 1099 VMRLYHDHTLFGGHFGVTVTLAKI-SPIYYWPKLQHSIIQYIRTCVQCQLIK--SHRP--RLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPA 1329
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: POL_MLVMO (Gag-Pol polyprotein OS=Moloney murine leukemia virus GN=gag-pol PE=1 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12 Identity = 58/196 (29.59%), Postives = 84/196 (42.86%), Query Frame = 2 Query: 167 YFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKR-LLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFG 751 Y+ + + T +C +C N S ++ T + W ID P G + +V ID F+ WIE + T K T + + R+G+P L TDNG F + + LGI+ K PQS+GQVE N+T+K L K L WV L L+ R T G TP+ + +G Sbjct: 1408 YYMLNRDRTLKNITETCKACAQ-VNASKSAVKQGTRVRGHRPGTHWEIDFTEIKP-GLYGYKYLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG 1600
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: POL_BAEVM (Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12 Identity = 63/233 (27.04%), Postives = 101/233 (43.35%), Query Frame = 2 Query: 62 LDDDDADYVLREVHEGICGNHSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSF-ANFSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGA--WVDELSGVLWAYRTTHKTATGETPFALAFG 751 L +A +++++H H G R L + + + P ++ T +C CQ A + P K T P ++ W ID P G + +V +D F+ W+E + T + + R+G+P + +DNG F + + + LGI K PQS+GQVE N+T+K L T+L + G W LS L R T G TP+ + +G Sbjct: 832 LPQKEALAMIQQMH---AWTHLGNRKLKLLIEKTDFLIPRASTLIEQVTSACKVCQQVNAGATRVPAGKRTRGNRPGVY--WEIDFTEVKPHYAGYK-YLLVFVDTFSGWVEAFPTRQETAHIVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETL-TKLTLETGLKDWRRLLSLALLRARNT-PNRFGLTPYEILYG 1056 The following BLAST results are available for this feature:
BLAST of CX047192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >CX047192 ID=CX047192; Name=CX047192; organism=Citrus sinensis; type=EST; length=900bpback to top |