CX047187

Overview
NameCX047187
Unique NameCX047187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.128e-27
Identity = 63/153 (41.18%), Postives = 95/153 (62.09%), Query Frame = 2
Query:   53 SLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            SL+  F    RS + D ++  + DPF+    +P      E  A    RVDWKETPE H    D+PG+K++E+K+++E++RVL++SG          D WHRVERS GKF R+F+LP+N  ++ V+A +ENGVLT+++ K   +++K P V  I
Sbjct:    2 SLIPGFFGGRRSNVFDPFSLDMWDPFKDFH-VPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPK---EEVKKPDVKAI 150          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.128e-27
Identity = 65/156 (41.67%), Postives = 95/156 (60.90%), Query Frame = 2
Query:   53 SLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELER------DETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRV 502
            SL+  F    RS + D ++  + DPF+     PF           E  A    RVDWKETPE H    D+PG+K++E+K+E+E++RVL++SG          DQWHR+ERS GKF R+F+LP+N  +D V+A +ENGVLT+++ K   +++K P V
Sbjct:    2 SLIPSFFGGRRSNVFDPFSLDVWDPFK---DFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPK---EEVKKPEV 151          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.779e-27
Identity = 64/144 (44.44%), Postives = 91/144 (63.19%), Query Frame = 2
Query:   83 RSLLSDLWTERLADPF-RVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            RS + D ++  L DPF  V   +      ++T A + AR+DWKETPE H    D+PGVK++E+K+EVEE  VL +SG          D+WHRVERS G+F R+F+LP+N  +D V+A +ENGVLT+++ K    ++K P V  I
Sbjct:    6 RSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKA---EVKKPEVKAI 146          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27
Identity = 56/114 (49.12%), Postives = 79/114 (69.30%), Query Frame = 2
Query:  170 ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            E  A    R+DWKETPE H    D+PG+K++E+K+E+E++RVL++SG          DQWHRVERS GKF R+F+LP+N  +D V+A +ENGVLT+++ K   ++IK P V  I
Sbjct:   29 ENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPK---EEIKKPEVKSI 139          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27
Identity = 60/130 (46.15%), Postives = 82/130 (63.08%), Query Frame = 2
Query:   92 LSDLWTERLADPF----RVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKK 469
            L ++W     DPF      L  +P      ET A + AR+DWKETPE H    D+PGVK++E+K+EVE+  VLR+SG          D WHRVERS G+F R+F+LP+N  +D V+A +ENGVLT+++ K
Sbjct:   23 LDEIW-----DPFFGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTVPK 147          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27
Identity = 61/125 (48.80%), Postives = 86/125 (68.80%), Query Frame = 2
Query:   98 DLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKL 472
            D+W     DPF+ L Q P  L   ET A++ ARVDWKET E H    D+PG+K++E+K+E+E++ VL++SG          D WHRVERS G+F R+FKLP+NV +D V+A +ENGVLT+++ K+
Sbjct:   24 DVW-----DPFKEL-QFPSSLS-GETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVTVPKV 141          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27
Identity = 65/141 (46.10%), Postives = 90/141 (63.83%), Query Frame = 2
Query:   95 SDLWTERLADPFRVLEQ--IPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            +D W     DPF  + +  +P   +RD T A + ARVDWKETPE H    D+PGVK++E+K+EVEE  VL +SG          D+WHRVERS G+F R+F+LP+N  +D V+A +ENGVLT+++ K    ++K P V  I
Sbjct:   14 ADFW-----DPFDGVFRSLVPATSDRD-TAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKA---EVKKPEVKAI 145          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.740e-27
Identity = 69/168 (41.07%), Postives = 101/168 (60.12%), Query Frame = 2
Query:  116 LADPFRVLEQIPFE--------LERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEE-NRVLRVSGXXXXXXXXX-------GDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI--AGGEDETAKLQSEARQEL 565
            L DPFRVLEQ P              E  A++ AR DWKETPE H + +DVPGV+R ++++EV+E +RVLRVSG                G +WHR ER+ G+FWR+F++P   D+  V A+L++GVLT+++ K+   + + PRVV I  AG  D  A++   ++ E+
Sbjct:   39 LDDPFRVLEQSPLRPAGGVAAAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVTVPKVPGHRGREPRVVAIDGAGAGDMEAEVVKASKAEM 206          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.056e-26
Identity = 65/154 (42.21%), Postives = 93/154 (60.39%), Query Frame = 2
Query:   53 SLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERD-ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            SL+  F    RS + D ++  + DPF+     PF      E  A    RVDWKETPE H    D+PG+K++E+K+E+++ RVL++SG          D WHRVERS GK  R+F+LP+N  +D V+A +ENGVLT+++ K   ++IK P V  I
Sbjct:    2 SLIPSFFGGRRSSVFDPFSLDVWDPFK---DFPFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPK---EEIKKPDVKAI 149          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.056e-26
Identity = 67/159 (42.14%), Postives = 95/159 (59.75%), Query Frame = 2
Query:   53 SLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERD------ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            SL+  F    RS + D ++  + DP   L+  PF           E  A    RVDWKETPE H    D+PG+K++E+K+EVE++RVL++SG          D+WHRVERS GKF R+F+LP+N  +D V+A +ENGVLT+++ K   ++IK   V  I
Sbjct:    2 SLIPSFFSGRRSNVFDPFSLDVWDP---LKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPK---EEIKKAEVKSI 154          
The following BLAST results are available for this feature:
BLAST of CX047187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP14_SOYBN2.128e-2741.1817.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA2.128e-2741.6718.2 kDa class I heat shock protein OS=Medicago sa... [more]
HS16B_ORYSJ2.779e-2744.4416.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HSP11_MEDSA3.629e-2749.1218.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP11_CHERU3.629e-2746.1518.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS178_ARATH3.629e-2748.8017.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16C_ORYSJ3.629e-2746.1016.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS219_ORYSJ4.740e-2741.0721.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP11_SOYBN1.056e-2642.2117.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA1.056e-2642.1418.1 kDa class I heat shock protein OS=Pisum sativ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F09-K17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047187 ID=CX047187; Name=CX047187; organism=Citrus sinensis; type=EST; length=804bp
GCCAATGCTGCTCTTGGCAATATTGGCATGTCTTGTGGGCTCATCAAATG
GCTCTCTGCTGACGCCCTTCGCTGATCGTCCGAGGAGTCTGTTATCCGAT
CTCTGGACAGAACGTTTGGCAGACCCCTTCCGGGTGCTAGAGCAAATCCC
ATTTGAGCTCGAGAGGGACGAGACCATGGCGCTATCTCCCGCTAGAGTGG
ACTGGAAAGAGACACCGGAGGGTCACTTCATAATGCTGGATGTACCGGGG
GTGAAGAGGGACGAGCTGAAGATTGAAGTTGAGGAGAATCGCGTGCTGCG
AGTGAGCGGAGAGAGGAAACGGGAGGAGGAGAAGAAGGGCGATCAGTGGC
ACAGAGTGGAGAGATCCCATGGCAAGTTTTGGAGGCAGTTCAAGCTGCCG
GACAATGTGGATTTAGATTCTGTACAGGCTAAGCTTGAAAATGGTGTGCT
CACTTTGTCCTTGAAGAAGCTGTCACCTGACCAGATCAAAGGTCCGAGAG
TTGTCGGCATTGCGGGCGGAGAGGACGAAACGGCCAAGCTGCAGAGCGAG
GCTAGGCAAGAGCTTTAGAGGTTTTTTGCCTGCCATTGGGTTTATGTCAG
TGTGGTGTGGAGAATAAGGGTGGTTTTACTGCAATGTTGAGCTAGCTTTG
TTTTTTACTTTTGTTTTGTCGTTGTCTTCGTTTGATGCAAAATCTGCTGT
CTTGTAATAAGTTTAATACTGTAAAATAATTTCTCTTGGTAACATTCTCT
CTGCACTATTAAAGTATAAATAACGAGGCAGCACATGAAGCTGATACAGC
TCTC
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