CX047187

Overview
NameCX047187
Unique NameCX047187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.379e-26
Identity = 59/134 (44.03%), Postives = 87/134 (64.93%), Query Frame = 2
Query:   68 FADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKK 469
            F +  RS + D ++  + DPF+ L       E     A+  ARVDW+ETPE H    D+PG+K++E+K+E+EE+ VL++SG          D WHRVERS G+F R+F+LP+NV +D V+A +ENGVLT+++ K
Sbjct:    8 FNNNRRSNIFDPFSLDVWDPFKELTSSSLSRENS---AIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPK 138          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.073e-26
Identity = 62/159 (38.99%), Postives = 95/159 (59.75%), Query Frame = 2
Query:   53 SLLTPFADRPRSLLSDLWTERLADPFR------VLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            SL+  F    R+ + D ++  + DPF+       L    F     E  A    RVDWKETPE H    D+PG+K++E+K+++E+++VL++SG          D WHRVERS GKF R+F+LP+N  ++ V+A +ENGVLT+++ K   +++K P V  I
Sbjct:    2 SLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPK---EEVKKPDVKAI 157          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.241e-26
Identity = 62/166 (37.35%), Postives = 97/166 (58.43%), Query Frame = 2
Query:   14 LAILACLVGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            ++++  + G    ++  PF+        D+W     DPF+     P  L   E  A    RVDWKETPE H    D+PG+K++E+K+++E++RVL++SG          D WHRVERS G F R+F+LP+N  ++ V+A +ENGVLT+++ K   +++K P V  I
Sbjct:    1 MSLIPSIFGGRRSNVFDPFS-------LDVW-----DPFKDFH-FPTSLSA-ENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPK---EEVKKPDVKAI 149          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.241e-26
Identity = 55/115 (47.83%), Postives = 79/115 (68.70%), Query Frame = 2
Query:  170 ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQ--IKGPRVVG 508
            ET A + AR+DWKETPE H    DVPG+K++E+K+EVE+  VL++SG          D+WHRVERS GKF R+F+LP+N   + ++A +ENGVLT+++ K  P +  +K  +V G
Sbjct:   47 ETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.241e-26
Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = 2
Query:  170 ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            ET A + AR+DWKETPE H    DVPG+K++E+K+EV++  +L++SG          DQWHRVERS GKF R+F+LPDN   + ++A +ENGVLT+++ K   ++ K P V  I
Sbjct:   47 ETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPK---EEAKKPDVKSI 157          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.241e-26
Identity = 58/139 (41.73%), Postives = 84/139 (60.43%), Query Frame = 2
Query:   98 DLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQ--IKGPRVVG 508
            DLW      PF       F     +  A + AR+DWKETPE H    DVPG+K++E+K+EVE+  VL++SG          D+WHRVERS GKF R+F+LP+N   + ++A +ENGVLT+++ K  P +  +K  ++ G
Sbjct:   16 DLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.845e-26
Identity = 57/139 (41.01%), Postives = 88/139 (63.31%), Query Frame = 2
Query:   53 SLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKK 469
            SL+      PRS + D ++  + DPF+    +P      E  A    RVDWKET E H +  D+PG+K++E+K+++E++RVL++SG          D WHRV+RS GKF R+F+LP+N  ++ V+A +ENGVLT+++ K
Sbjct:    2 SLIPSIFGGPRSNVFDPFSLDMWDPFKDFH-VPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPK 139          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.940e-26
Identity = 62/166 (37.35%), Postives = 97/166 (58.43%), Query Frame = 2
Query:   14 LAILACLVGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            ++I+    GS   ++L PF+        D+W      P         E  + ET A +   +DWKETP+ H    D+PG+K++E+K+EVEE +VL++SG          ++WHRVE S GKF R+F+LP+N ++D V+A +ENGVLT+++ K+   ++K P V  I
Sbjct:    1 MSIIPSFFGSRRSNVLNPFS-------LDIWDPFQDYPLITSSGTSSEFGK-ETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKV---EMKKPEVKSI 155          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.168e-25
Identity = 64/141 (45.39%), Postives = 87/141 (61.70%), Query Frame = 2
Query:   95 SDLWTERLADPFRVLEQIPFELER--DETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            +DLW    ADPF     I   +     ET A + AR+DWKETPE H    D+PGVK++E+K+EVE+  VL VSG          D+WHRVERS GKF R+F+L ++  ++ V+A LENGVLT+++ K    ++K P V  I
Sbjct:   14 ADLW----ADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA---EVKKPEVKAI 147          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.525e-25
Identity = 63/172 (36.63%), Postives = 98/172 (56.98%), Query Frame = 2
Query:   14 LAILACLVGSSNGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETM----ALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIAG 517
            ++++  + G    ++  PF+        DLW     DPF         L    T     A + ARVDWKETPE H    D+PG+K++E+K+EVE+  VL++SG          D+WHRVER+ GKF R+F+LP+N  ++ V+A +ENGVLT+ + K +P++    + + I+G
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQ-------DLW-----DPFEGFFTPSSALANASTARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPK-APEKKPQVKSIDISG 159          
The following BLAST results are available for this feature:
BLAST of CX047187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS17B_ARATH1.379e-2644.0317.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP16_SOYBN3.073e-2638.9918.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN5.241e-2637.3517.5 kDa class I heat shock protein OS=Glycine max... [more]
HS181_ORYSJ5.241e-2647.8318.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS17A_ORYSJ5.241e-2648.2517.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ5.241e-2641.7317.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP15_SOYBN6.845e-2641.0117.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_DAUCA8.940e-2637.3518.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS16B_WHEAT1.168e-2545.3916.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS181_ARATH1.525e-2536.6318.1 kDa class I heat shock protein OS=Arabidopsis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12F09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F09-K17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047187 ID=CX047187; Name=CX047187; organism=Citrus sinensis; type=EST; length=804bp
GCCAATGCTGCTCTTGGCAATATTGGCATGTCTTGTGGGCTCATCAAATG
GCTCTCTGCTGACGCCCTTCGCTGATCGTCCGAGGAGTCTGTTATCCGAT
CTCTGGACAGAACGTTTGGCAGACCCCTTCCGGGTGCTAGAGCAAATCCC
ATTTGAGCTCGAGAGGGACGAGACCATGGCGCTATCTCCCGCTAGAGTGG
ACTGGAAAGAGACACCGGAGGGTCACTTCATAATGCTGGATGTACCGGGG
GTGAAGAGGGACGAGCTGAAGATTGAAGTTGAGGAGAATCGCGTGCTGCG
AGTGAGCGGAGAGAGGAAACGGGAGGAGGAGAAGAAGGGCGATCAGTGGC
ACAGAGTGGAGAGATCCCATGGCAAGTTTTGGAGGCAGTTCAAGCTGCCG
GACAATGTGGATTTAGATTCTGTACAGGCTAAGCTTGAAAATGGTGTGCT
CACTTTGTCCTTGAAGAAGCTGTCACCTGACCAGATCAAAGGTCCGAGAG
TTGTCGGCATTGCGGGCGGAGAGGACGAAACGGCCAAGCTGCAGAGCGAG
GCTAGGCAAGAGCTTTAGAGGTTTTTTGCCTGCCATTGGGTTTATGTCAG
TGTGGTGTGGAGAATAAGGGTGGTTTTACTGCAATGTTGAGCTAGCTTTG
TTTTTTACTTTTGTTTTGTCGTTGTCTTCGTTTGATGCAAAATCTGCTGT
CTTGTAATAAGTTTAATACTGTAAAATAATTTCTCTTGGTAACATTCTCT
CTGCACTATTAAAGTATAAATAACGAGGCAGCACATGAAGCTGATACAGC
TCTC
back to top