CX047187

Overview
NameCX047187
Unique NameCX047187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.992e-25
Identity = 60/155 (38.71%), Postives = 93/155 (60.00%), Query Frame = 2
Query:   53 SLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELER--DETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            S++  F    RS + D ++  + DPF+    +         ET A     +DWKETP+ H    D+PG+K++E+K+E+EE +VL++SG          D+WHRVERS GKF R+F+LP+N  +D V+A + NGV+T+++ K+   +IK P V  I
Sbjct:    2 SIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKV---EIKKPEVKAI 153          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.992e-25
Identity = 59/148 (39.86%), Postives = 91/148 (61.49%), Query Frame = 2
Query:   47 NGSLLTPFADRPRSLLSDLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIK 490
            N ++  PF+        D+W     DPF+ L+          + A++ ARVDWKET E H    D+PG+K++E+K+E+E++ VL++SG          D WHRVERS G F R+F+LP+NV +D V+A +ENGVLT+++ K+  ++ K
Sbjct:   15 NNNIFDPFS-------LDVW-----DPFKELQ-----FPSSSSSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVTVPKVETNKKK 145          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.202e-24
Identity = 56/140 (40.00%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  122 DPFRVLEQIPFE---------LERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKL--SPDQIKGPRVVG 508
            DPF +    PFE             +  A + A+VDW+ETPE H    DVPG+K++E+K+EVE+  +L++SG          D WHRVERS GKF R+F+LP+N  ++ V+A +ENGVL++++ K+  S  ++K   + G
Sbjct:   17 DPFSLDVWDPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.202e-24
Identity = 49/109 (44.95%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  152 FELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSP 478
            F     +  A + AR+DWKETPE H    DVPG+K++E+K+EV++  +L++SG          D+WHRVERS GKF R+F+LP+N   + ++A +ENGVLT+++ K  P
Sbjct:   39 FPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEP 147          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.093e-23
Identity = 47/116 (40.52%), Postives = 81/116 (69.83%), Query Frame = 2
Query:  170 ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIAG 517
            +  A + A+VDW+ETPE H    D+PG++++E+K+EVE+  +L++SG          D+WHRVERS GKF R+F+LP+N  ++ ++A +ENGVL++++ K+ P++    + + I+G
Sbjct:   43 DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKV-PEKKPEVKSIDISG 157          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.336e-21
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  185 SPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKK 469
            S A +DWKET   H  M D+PGV+R+E+++EVEE +VLR+SG         G++WHRVERS  +F R  +LP N + D V A L+NGVLT+++ K
Sbjct:   68 STASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTITIPK 162          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.976e-21
Identity = 55/141 (39.01%), Postives = 81/141 (57.45%), Query Frame = 2
Query:   98 DLWTERLADPFRVLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXG---DQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            D W +  ADPF  +  +      +    L+  RVDWKETP  H    D+PGV++D+ K+EVE+  VL +SG         G   ++WH VERS GKF R+F+LP    +D V A ++NGVLT+++ K   ++ K P++  I
Sbjct:   16 DFWAD--ADPFGAVRSLA-----ERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPK---EETKKPQLKAI 146          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.607e-17
Identity = 43/114 (37.72%), Postives = 74/114 (64.91%), Query Frame = 2
Query:  170 ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            + MA +PA  D KE P  +  ++D+PG+K  ++K++VEE+ VL +SG         G ++ R+ER  GKF R+F LP+N + D++ A  ++GVLT++++KL P + K P+ + +
Sbjct:   41 KAMAATPA--DVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEV 152          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.917e-16
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  176 MALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            MA +PA  D KE P  +  ++D+PG+   +++++VE+ RVL VSG           ++ R+ER  GKF R+F LPDN D+D V A   +GVLT++++KL P + K P+ + +
Sbjct:   52 MAATPA--DVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEV 161          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.421e-16
Identity = 41/114 (35.96%), Postives = 72/114 (63.16%), Query Frame = 2
Query:  170 ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            + MA +PA  D KE P  +  M+D+PGVK  ++K++VE+  VL +SG         G ++ ++ER  GK  R+F LP+N +++++ A  ++GVLT+++ KL P + K P+ + +
Sbjct:   38 KAMAATPA--DVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVTVNKLPPPEPKKPKTIQV 149          
The following BLAST results are available for this feature:
BLAST of CX047187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP11_DAUCA1.992e-2538.7117.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS17A_ARATH1.992e-2539.8617.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HSP17_ARATH2.202e-2440.0017.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS177_ORYSJ2.202e-2444.9517.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS17C_ARATH1.093e-2340.5217.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS189_ORYSJ1.336e-2149.4718.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS166_ORYSJ2.976e-2139.0116.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE2.607e-1737.7217.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP22_MAIZE4.917e-1639.2917.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_PEA6.421e-1635.9617.1 kDa class II heat shock protein OS=Pisum sati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F09-K17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047187 ID=CX047187; Name=CX047187; organism=Citrus sinensis; type=EST; length=804bp
GCCAATGCTGCTCTTGGCAATATTGGCATGTCTTGTGGGCTCATCAAATG
GCTCTCTGCTGACGCCCTTCGCTGATCGTCCGAGGAGTCTGTTATCCGAT
CTCTGGACAGAACGTTTGGCAGACCCCTTCCGGGTGCTAGAGCAAATCCC
ATTTGAGCTCGAGAGGGACGAGACCATGGCGCTATCTCCCGCTAGAGTGG
ACTGGAAAGAGACACCGGAGGGTCACTTCATAATGCTGGATGTACCGGGG
GTGAAGAGGGACGAGCTGAAGATTGAAGTTGAGGAGAATCGCGTGCTGCG
AGTGAGCGGAGAGAGGAAACGGGAGGAGGAGAAGAAGGGCGATCAGTGGC
ACAGAGTGGAGAGATCCCATGGCAAGTTTTGGAGGCAGTTCAAGCTGCCG
GACAATGTGGATTTAGATTCTGTACAGGCTAAGCTTGAAAATGGTGTGCT
CACTTTGTCCTTGAAGAAGCTGTCACCTGACCAGATCAAAGGTCCGAGAG
TTGTCGGCATTGCGGGCGGAGAGGACGAAACGGCCAAGCTGCAGAGCGAG
GCTAGGCAAGAGCTTTAGAGGTTTTTTGCCTGCCATTGGGTTTATGTCAG
TGTGGTGTGGAGAATAAGGGTGGTTTTACTGCAATGTTGAGCTAGCTTTG
TTTTTTACTTTTGTTTTGTCGTTGTCTTCGTTTGATGCAAAATCTGCTGT
CTTGTAATAAGTTTAATACTGTAAAATAATTTCTCTTGGTAACATTCTCT
CTGCACTATTAAAGTATAAATAACGAGGCAGCACATGAAGCTGATACAGC
TCTC
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