CX047187

Overview
NameCX047187
Unique NameCX047187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.421e-16
Identity = 45/115 (39.13%), Postives = 72/115 (62.61%), Query Frame = 2
Query:  170 ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXX-GDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            + MA +PA  D  E P  +  ++D+PG+K DE+K++VE + VL VSG          G ++ R+ER  GKF R+F+LP+N DLD + A   +GVL ++++KL P + K P+ + +
Sbjct:   40 KAMAATPA--DVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQKLPPPEPKKPKTIQV 152          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.431e-15
Identity = 43/112 (38.39%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  176 MALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            MA++PA  D KE P  +  ++D+PG+   ++K++VE+ RVL +SG           ++ R+ER  GKF R+F LPDN D+D + A   +GVLT++++KL P + K P+ + +
Sbjct:   50 MAVTPA--DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREEREDA-KYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVTVEKLPPPEPKKPKTIEV 158          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.868e-15
Identity = 40/112 (35.71%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  176 MALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            MA +PA  D KE P  +  ++D+PG+K  ++K++VE + VL +SG         G ++ R+ER  GKF ++F LP++ + D + A  ++GVLT++++KL P + K P+ + +
Sbjct:   48 MAATPA--DVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVTVEKLPPPEPKKPKTIQV 157          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.868e-15
Identity = 43/116 (37.07%), Postives = 72/116 (62.07%), Query Frame = 2
Query:  176 MALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQ----WHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            MA +PA  D K+ P  +  ++D+PG+K  ++K++VEE R+L +SG           +    + R+ER  GKF R+F LPDN D+D + A  ++GVLT++++KL P + K P+ + +
Sbjct:   50 MAATPA--DVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEV 163          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.187e-15
Identity = 43/115 (37.39%), Postives = 70/115 (60.87%), Query Frame = 2
Query:  170 ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXX-GDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            + MA +PA  D  E P+ +   +D+PG+K DE+++++E   VL VSG          G ++ R+ER  GKF R+F+LPDN DL+ + A   +GVL +++ KL P + K P+ + +
Sbjct:   41 KAMAATPA--DVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVTIPKLPPPEPKKPKTIQV 153          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.100e-15
Identity = 44/116 (37.93%), Postives = 73/116 (62.93%), Query Frame = 2
Query:  170 ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGD--QWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            + MA +PA  D KE P  +  + D+PGVK  E+K++VE++ VL VSG          D  ++ R+ER  GKF R+F LP+N +++++ A  ++GVL ++++KL P + K P+ V +
Sbjct:   51 KAMAATPA--DVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTVEKLPPPEPKKPKTVEV 164          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.100e-15
Identity = 39/114 (34.21%), Postives = 71/114 (62.28%), Query Frame = 2
Query:  170 ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            + MA +PA  D KE P  +   +D+PG+K  ++K++VE++ +L + G         G ++ R+ER  GK  R+F LP+N + D++ A  ++GVL+++++KL P + K PR + +
Sbjct:   45 KAMAATPA--DVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVTVQKLPPPEPKKPRTIQV 156          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.698e-14
Identity = 43/112 (38.39%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  176 MALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            MA +PA  D KE    +  ++D+PG+   +++++VE+ RVL +SG           ++ R+ER  GKF R+F LPDN D+D V A   +GVLT++++KL P + K P+ + I
Sbjct:   43 MAATPA--DVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREEREDA-KYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEI 151          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.088e-13
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  146 IPFELERD----------ETMALSPARVDWKETPEGHFIML--DVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGD-----QWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            +P ELER           +  A++   +D KE      ++L  D+PGV   ++++EVE+  VL +SG          D     ++ R+ER  GKF R+F LP++ DLD V+A+ ++GVLT+++ K  P + K PRVV +
Sbjct:   24 LPDELERQLNPPTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVTVDKKPPPEPKKPRVVEV 162          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.645e-13
Identity = 39/118 (33.05%), Postives = 71/118 (60.17%), Query Frame = 2
Query:  170 ETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXX-GDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIAGG 520
            + MA +PA  D KE P  +  ++D+PG+K  ++K++V+ + VL +SG          G ++ R+ER  GK  R+F LP+N + + + A  ++GVLT++++ + P + K PR + +  G
Sbjct:   40 KAMAATPA--DVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVTVENVPPPEPKKPRTIEVKIG 155          
The following BLAST results are available for this feature:
BLAST of CX047187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS176_ARATH6.421e-1639.1317.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP21_MAIZE1.431e-1538.3917.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_HELAN1.868e-1535.7117.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP18_ORYSJ1.868e-1537.0718.0 kDa class II heat shock protein OS=Oryza sati... [more]
HS177_ARATH3.187e-1537.3917.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP22_IPONI7.100e-1537.9318.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_SOYBN7.100e-1534.2117.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP23_MAIZE2.698e-1438.3917.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP19_ORYSJ5.088e-1334.5319.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_IPONI6.645e-1333.0517.2 kDa class II heat shock protein OS=Ipomoea ni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F09-K17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047187 ID=CX047187; Name=CX047187; organism=Citrus sinensis; type=EST; length=804bp
GCCAATGCTGCTCTTGGCAATATTGGCATGTCTTGTGGGCTCATCAAATG
GCTCTCTGCTGACGCCCTTCGCTGATCGTCCGAGGAGTCTGTTATCCGAT
CTCTGGACAGAACGTTTGGCAGACCCCTTCCGGGTGCTAGAGCAAATCCC
ATTTGAGCTCGAGAGGGACGAGACCATGGCGCTATCTCCCGCTAGAGTGG
ACTGGAAAGAGACACCGGAGGGTCACTTCATAATGCTGGATGTACCGGGG
GTGAAGAGGGACGAGCTGAAGATTGAAGTTGAGGAGAATCGCGTGCTGCG
AGTGAGCGGAGAGAGGAAACGGGAGGAGGAGAAGAAGGGCGATCAGTGGC
ACAGAGTGGAGAGATCCCATGGCAAGTTTTGGAGGCAGTTCAAGCTGCCG
GACAATGTGGATTTAGATTCTGTACAGGCTAAGCTTGAAAATGGTGTGCT
CACTTTGTCCTTGAAGAAGCTGTCACCTGACCAGATCAAAGGTCCGAGAG
TTGTCGGCATTGCGGGCGGAGAGGACGAAACGGCCAAGCTGCAGAGCGAG
GCTAGGCAAGAGCTTTAGAGGTTTTTTGCCTGCCATTGGGTTTATGTCAG
TGTGGTGTGGAGAATAAGGGTGGTTTTACTGCAATGTTGAGCTAGCTTTG
TTTTTTACTTTTGTTTTGTCGTTGTCTTCGTTTGATGCAAAATCTGCTGT
CTTGTAATAAGTTTAATACTGTAAAATAATTTCTCTTGGTAACATTCTCT
CTGCACTATTAAAGTATAAATAACGAGGCAGCACATGAAGCTGATACAGC
TCTC
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