CX047187

Overview
NameCX047187
Unique NameCX047187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.133e-12
Identity = 39/125 (31.20%), Postives = 65/125 (52.00%), Query Frame = 2
Query:  152 FELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVER-----SHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            +   R +  + S A +DW E+   H   ++VPG  ++++K+++EE  VL + G            WH  ER        +F R+ +LP+NV +D V+A +ENGVLT+ + K +  +    R V I
Sbjct:    9 YPFRRFQEWSRSTALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTVVVPKDTSSKSSKVRNVNI 133          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 42/122 (34.43%), Postives = 66/122 (54.10%), Query Frame = 2
Query:  125 PFR-VLEQIPFELERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQ------WHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKK 469
            PFR +L   PF    D   A + A +DW ETP  H + ++VPG+ +D++K++VE+  VL V G           +      WH  ER   +F R+  LP  V ++ ++A ++NGVLT+ + K
Sbjct:    9 PFRRILYGRPFP--PDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVVPK 128          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 38/116 (32.76%), Postives = 68/116 (58.62%), Query Frame = 2
Query:  170 ETMALSPARVDWKETPEGHFIMLDVP-GVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIA 514
            +T A +   ++ +ET E +    D+P GVK++E+++EV+E  VL ++G         G + H +ERS   F+ +F LPD+  +D V+A ++ G+LT+++ K+  D  K P +   A
Sbjct:   34 DTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVTVPKVVTD--KQPAIAAAA 147          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.596e-12
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 2
Query:  293 VLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGI 511
            +L++SG          D WHRVERS GKF R F+LPDN  +D V+A +ENGVLT+++ K   ++IK P V  I
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPK---EEIKKPDVKAI 70          
BLAST of CX047187 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.637e-11
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  122 DPFRVLEQI----PFEL-------ERDETMALSPARVDWKETPEGHFIMLDVPGVKRDELKIEVEENRVLRVSGXXXXXXXXXGDQWHRVERSHGKFWRQFKLPDNVDLDSVQAKLENGVLTLSLKKLSPDQIKGPRVVGIAGGEDETAK 538
            DPF+ ++++    PFEL        R    A  PA  + +ET E +    D+PGV   ++++ +  +RV  VSG          ++++  ER+ G F R F LP+ VD D+V+A L+NGVLTL+L K    Q K  +V      + E  K
Sbjct:   21 DPFQQMQELMNWDPFELANHPWFANRQGPPAFVPA-FEVRETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLTLPKRPEVQPKRIQVASSGTEQKEHIK 168          
The following BLAST results are available for this feature:
BLAST of CX047187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS157_ARATH1.133e-1231.2015.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HSP16_ORYSJ3.298e-1234.4316.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS17B_ORYSJ3.298e-1232.7617.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HSP12_SOYBN9.596e-1247.95Class I heat shock protein (Fragment) OS=Glycine m... [more]
SP21_STIAU1.637e-1133.33Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12F09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12F09-K17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047187 ID=CX047187; Name=CX047187; organism=Citrus sinensis; type=EST; length=804bp
GCCAATGCTGCTCTTGGCAATATTGGCATGTCTTGTGGGCTCATCAAATG
GCTCTCTGCTGACGCCCTTCGCTGATCGTCCGAGGAGTCTGTTATCCGAT
CTCTGGACAGAACGTTTGGCAGACCCCTTCCGGGTGCTAGAGCAAATCCC
ATTTGAGCTCGAGAGGGACGAGACCATGGCGCTATCTCCCGCTAGAGTGG
ACTGGAAAGAGACACCGGAGGGTCACTTCATAATGCTGGATGTACCGGGG
GTGAAGAGGGACGAGCTGAAGATTGAAGTTGAGGAGAATCGCGTGCTGCG
AGTGAGCGGAGAGAGGAAACGGGAGGAGGAGAAGAAGGGCGATCAGTGGC
ACAGAGTGGAGAGATCCCATGGCAAGTTTTGGAGGCAGTTCAAGCTGCCG
GACAATGTGGATTTAGATTCTGTACAGGCTAAGCTTGAAAATGGTGTGCT
CACTTTGTCCTTGAAGAAGCTGTCACCTGACCAGATCAAAGGTCCGAGAG
TTGTCGGCATTGCGGGCGGAGAGGACGAAACGGCCAAGCTGCAGAGCGAG
GCTAGGCAAGAGCTTTAGAGGTTTTTTGCCTGCCATTGGGTTTATGTCAG
TGTGGTGTGGAGAATAAGGGTGGTTTTACTGCAATGTTGAGCTAGCTTTG
TTTTTTACTTTTGTTTTGTCGTTGTCTTCGTTTGATGCAAAATCTGCTGT
CTTGTAATAAGTTTAATACTGTAAAATAATTTCTCTTGGTAACATTCTCT
CTGCACTATTAAAGTATAAATAACGAGGCAGCACATGAAGCTGATACAGC
TCTC
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